Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 93004892

GI number: 93004892

Start: 70007

End: 70528

Strand: Reverse

Name: yqgF [C]

Synonym: Pcryo_0061

Alternate gene names: 93004892

Gene position: 70528-70007 (Counterclockwise)

Preceding gene: 93004893

Following gene: 93004891

Centisome position: 2.3

GC content: 45.4

Gene sequence:

>522_bases
ATGGTAGATAGCACTCTTATAAAAGATAGTACTGATACTAGCGTTGCTGAGCCAGTGATCAAGCCACACCTTATCTTAGC
CTTAGATTATGGGGTTAAAAAAATGGGCATGGCACTCGGTAATAGCTTGACAGAAACGGCGCGTGCCTTTGATATTTTAG
CGATGAATAATGGGCAACCTGATTGGGATAATCTACTCGGTATTATCAAGGTTTGGGGCGTGGCAAAGGTAGTAGTCGGA
CTGCCGTTAAATATGGACGGTAGCAGCTCTATGCTGTCAAAACGCGCACATAAATTTGCCCGTCGTCTGGCACATAGAAT
CATGGAGCAGCATTTACCTGTCATCGTATCTCTATGTGATGAGCGCTTAACATCGGTCGCCGCGCGTGAGATAGCATGGG
AAAACGGCTGGATTAAACATGAGCGCGCTCCGATTGATGATATCTCTGCCTGTATTTTAATGTCAACCTACTTTGCTGAT
CCTCATAGCAGTATCGCCATCGACGCCATCAAAGCAGATTAA

Upstream 100 bases:

>100_bases
AGATTGGGGTTAATTTTGATTATTTAAGCAGCGACATCGGTCATGCTTAATCTCATATGTTGAACGAATACAGCAATAAA
ACTAGGAAACATCCCTTATT

Downstream 100 bases:

>100_bases
TTGAGCATTAGCTTTCTTTTTAATGTCCCATCAATACCTGATATAGTCGGTTCTATATAAAAGAAATACAAATGTTATCA
ATCACTACTGGGGTTAATTT

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MVDSTLIKDSTDTSVAEPVIKPHLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVG
LPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIKHERAPIDDISACILMSTYFAD
PHSSIAIDAIKAD

Sequences:

>Translated_173_residues
MVDSTLIKDSTDTSVAEPVIKPHLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVG
LPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIKHERAPIDDISACILMSTYFAD
PHSSIAIDAIKAD
>Mature_173_residues
MVDSTLIKDSTDTSVAEPVIKPHLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQPDWDNLLGIIKVWGVAKVVVG
LPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCDERLTSVAAREIAWENGWIKHERAPIDDISACILMSTYFAD
PHSSIAIDAIKAD

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=139, Percent_Identity=38.1294964028777, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 18991; Mature: 18991

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDSTLIKDSTDTSVAEPVIKPHLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQP
CCCCCCCCCCCCCHHHHHHHCCCEEEEEHHCHHHHHHHHCCHHHHHHHHHHEEEECCCCC
DWDNLLGIIKVWGVAKVVVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLTSVAAREIAWENGWIKHERAPIDDISACILMSTYFADPHSSIAIDAIKAD
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure
MVDSTLIKDSTDTSVAEPVIKPHLILALDYGVKKMGMALGNSLTETARAFDILAMNNGQP
CCCCCCCCCCCCCHHHHHHHCCCEEEEEHHCHHHHHHHHCCHHHHHHHHHHEEEECCCCC
DWDNLLGIIKVWGVAKVVVGLPLNMDGSSSMLSKRAHKFARRLAHRIMEQHLPVIVSLCD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERLTSVAAREIAWENGWIKHERAPIDDISACILMSTYFADPHSSIAIDAIKAD
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA