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The map label for this gene is glxA [H]

Identifier: 92115285

GI number: 92115285

Start: 3535128

End: 3536111

Strand: Direct

Name: glxA [H]

Synonym: Csal_3170

Alternate gene names: 92115285

Gene position: 3535128-3536111 (Clockwise)

Preceding gene: 92115284

Following gene: 92115286

Centisome position: 95.63

GC content: 69.11

Gene sequence:

>984_bases
ATGCGCTTACACTATGCCGGCCCGTTGCCCGAACCCATCGGGTTCCTGCTGCTGCCGCGCTTCTCGATGATGGCGTTCTT
CTCCGCCGTCGAGCCGCTGCGCATCGCCAACCGCATCGCCGGCGAGACGCTGTTCACCTGGCGTGTCATCAGTCTGGACA
GCGCCCCGGTCACCGCCAGCAACGACATGACCCTGCTCGCCGACGATTCGCTTGAGTCGGCTCCCGCCCTGCCCAGCATC
GCCATCTGCGCCAGTTTCGAGCCCGAGGAACGCCTGACCCGTCGCCTGCTGCGCTGGCTGCACCAACGCGACCAGGACGG
CTGCGTGCTGGGCGGCATCGATACCGGTAGCCTGATCCTGGCCCGCGCCGACCTGCTCACGGGGCACCGTGTCACCCTGC
ACTGGGAAAGCCTGCCGGCGTTTCGCGAGCGCTTCCCCGAACTCGACGCCGTCGAGTCGCTCTTCGAGGTCGGGCCGCGG
CGCTTCTCCTGTGCCGGCGGCGCCGCCGCGATGGACATGATGCTGGACCTGATTGCGCGCCGGCACGGCGAGGCCCTGGC
GGCAGCCGTCTCCGAGCAGTTGATCCACGCCCGCATGCGCCCGCGTCACGACCAGCAGCGTCAGGACCTCACCCAGCGCC
TGGGGACCCACAAGCACAGCGTGATCGAGGCCGTCGCCCTGATGGAGCGTCACCTCGAGGCGCCGTTGCCGCTCGCGCGA
CTCGCCGCGCGTATCGGCATTTCCCTGCGCCAGCTTCAGCGTCTCTTCGAGCAAGAGCTGGGCGAACGGCCACGCGACCA
CTATCTCCGCCTGCGTCTGCAACGCGCCCGGCAACTGCTGCGGGAAACCGACCGCGACATTCTCAGCATCGGCCTGGCCT
GCGGCTTCACTTCCGCCTCCAGCTTTTCGCGGGCCTACAAGCAGCATTTCGGCGCCAGCCCGCGACACGCCCGCCGCGGC
CCCGACACTCCCCCCACGGCATGA

Upstream 100 bases:

>100_bases
TCCGATCCTCTTCTCGATGCGTCCCTCATGCCGGGAGAATTTGCTATGGTAGCCACGTCGCGGCGACCGTCGCCCGATGT
ATCGCCGTGGGGGAGGACTG

Downstream 100 bases:

>100_bases
CGACTGACGGCAAGAAGACGTCGCCTGAGGTGTAAACGGCGGTGACGAGGGACGCCATGCTAGGCCCATGTTCCCCTGCC
CAGGAGGCCGCCATGACATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MRLHYAGPLPEPIGFLLLPRFSMMAFFSAVEPLRIANRIAGETLFTWRVISLDSAPVTASNDMTLLADDSLESAPALPSI
AICASFEPEERLTRRLLRWLHQRDQDGCVLGGIDTGSLILARADLLTGHRVTLHWESLPAFRERFPELDAVESLFEVGPR
RFSCAGGAAAMDMMLDLIARRHGEALAAAVSEQLIHARMRPRHDQQRQDLTQRLGTHKHSVIEAVALMERHLEAPLPLAR
LAARIGISLRQLQRLFEQELGERPRDHYLRLRLQRARQLLRETDRDILSIGLACGFTSASSFSRAYKQHFGASPRHARRG
PDTPPTA

Sequences:

>Translated_327_residues
MRLHYAGPLPEPIGFLLLPRFSMMAFFSAVEPLRIANRIAGETLFTWRVISLDSAPVTASNDMTLLADDSLESAPALPSI
AICASFEPEERLTRRLLRWLHQRDQDGCVLGGIDTGSLILARADLLTGHRVTLHWESLPAFRERFPELDAVESLFEVGPR
RFSCAGGAAAMDMMLDLIARRHGEALAAAVSEQLIHARMRPRHDQQRQDLTQRLGTHKHSVIEAVALMERHLEAPLPLAR
LAARIGISLRQLQRLFEQELGERPRDHYLRLRLQRARQLLRETDRDILSIGLACGFTSASSFSRAYKQHFGASPRHARRG
PDTPPTA
>Mature_327_residues
MRLHYAGPLPEPIGFLLLPRFSMMAFFSAVEPLRIANRIAGETLFTWRVISLDSAPVTASNDMTLLADDSLESAPALPSI
AICASFEPEERLTRRLLRWLHQRDQDGCVLGGIDTGSLILARADLLTGHRVTLHWESLPAFRERFPELDAVESLFEVGPR
RFSCAGGAAAMDMMLDLIARRHGEALAAAVSEQLIHARMRPRHDQQRQDLTQRLGTHKHSVIEAVALMERHLEAPLPLAR
LAARIGISLRQLQRLFEQELGERPRDHYLRLRLQRARQLLRETDRDILSIGLACGFTSASSFSRAYKQHFGASPRHARRG
PDTPPTA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=98, Percent_Identity=34.6938775510204, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36706; Mature: 36706

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHYAGPLPEPIGFLLLPRFSMMAFFSAVEPLRIANRIAGETLFTWRVISLDSAPVTAS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC
NDMTLLADDSLESAPALPSIAICASFEPEERLTRRLLRWLHQRDQDGCVLGGIDTGSLIL
CCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
ARADLLTGHRVTLHWESLPAFRERFPELDAVESLFEVGPRRFSCAGGAAAMDMMLDLIAR
HHHHHHCCCEEEEEEHHCHHHHHHCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHH
RHGEALAAAVSEQLIHARMRPRHDQQRQDLTQRLGTHKHSVIEAVALMERHLEAPLPLAR
HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
LAARIGISLRQLQRLFEQELGERPRDHYLRLRLQRARQLLRETDRDILSIGLACGFTSAS
HHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
SFSRAYKQHFGASPRHARRGPDTPPTA
HHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLHYAGPLPEPIGFLLLPRFSMMAFFSAVEPLRIANRIAGETLFTWRVISLDSAPVTAS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC
NDMTLLADDSLESAPALPSIAICASFEPEERLTRRLLRWLHQRDQDGCVLGGIDTGSLIL
CCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
ARADLLTGHRVTLHWESLPAFRERFPELDAVESLFEVGPRRFSCAGGAAAMDMMLDLIAR
HHHHHHCCCEEEEEEHHCHHHHHHCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHH
RHGEALAAAVSEQLIHARMRPRHDQQRQDLTQRLGTHKHSVIEAVALMERHLEAPLPLAR
HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
LAARIGISLRQLQRLFEQELGERPRDHYLRLRLQRARQLLRETDRDILSIGLACGFTSAS
HHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
SFSRAYKQHFGASPRHARRGPDTPPTA
HHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]