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The map label for this gene is kaiC [H]

Identifier: 92115147

GI number: 92115147

Start: 3377004

End: 3378455

Strand: Direct

Name: kaiC [H]

Synonym: Csal_3032

Alternate gene names: 92115147

Gene position: 3377004-3378455 (Clockwise)

Preceding gene: 92115143

Following gene: 92115148

Centisome position: 91.35

GC content: 62.47

Gene sequence:

>1452_bases
GTGAACGAGCCGCATGGAGAACGCATCAGCGTTGAGATCCCTGGGCTGGAAAGGATACTCAGAGGCGGGTTTCTGCCCGG
ACGCTCCTACCTGGTATCGGGTGGGCCGGGTACCGGAAAAACCACGCTGGGACTTCAGTACCTGGCCTCTTCGGCCGATG
GAAATGGATTGCTGATCAGCCTCGGCGAGTCAGAACGCAATCTGCGTGCGGATGCCCTCCGCATCGGCCTGTCCCTCGAC
GGCACCAGCGTGATCGATCTGTCTCCGGGAGCCGACGCCGAACCAGAGGCGGCGTACACCCTGCTGGAGCCCTGGGAAGC
GGAGGGCGTGGATATACGCTCGCGGATCGGCGCCCTGTTGCCCGATGGCCCTCCCGAGCGCGTATTCATCGACGCGCTGA
GCCAATTGCGTCAACTCATGCCGGATGCCTATCAATTCCGCAAACAGGTGATGGGGCTACTCGAATACCTCAATAGCGCC
GGGACAACGGTGCTCTATACAGCGGAGCAAGGGTCCTCGGCGGATACCGACCTGCGCTACCTCGGTGACGGTATCCTGGA
GCTGGAGCACCGGGAAAACCGGCGCATATTGCGCGTTCTCAAGTTCCGAGGTTCCGGGTTTTCCGAGGGCGAGCACACGC
TACGGCTCGGCGATCATGGCATGCAGGTCTTCGAACGCCTGATGCCTGGCGAGCATCGACGCACGTATGTGGCGGAAGAA
CTGCCTTGTGGCATCGGTGAACTGGACCGCCTCTCGGGCGGCGGCATCACACGCGGGACCGTCACCATCATTTCCGGCCC
CACCGGGGTCGGCAAGACCTCGCTCGGGCTTCAATACATGCACGAGGCGGCGCGGCGCGGCGAACGGTCCGTGGTCTACA
CGTTCGAAGAGAGCATCGGCACGCTGCGCACACGTTGCGAGGCGATCGGCATCCCCGTTTCGGACATGATGGCGAAGGGC
TCGCTGAGCATCGATGAAGTCGAGCCGCTGCACTACTCACCGGACGAGTTCGCCTGGCGGGTCAGGACCGAGGTCGAGCA
GCAAGGGGCCCGCATGGTCATGCTCGATAGCCTCGCGGGTTTTCGCCAATCCGTCAGGGGTGACGACATCACGGCGCATG
CCCATGCGCTGTGTCATTACCTCTCCAACATGGGCGTCACGGTCCTGCTGGTGAATGAACAGTCGGCGATCGCGGGCGAG
GAGCTGCGCCCGTCGGAGGACGATATCAACTACTTGGCGGACACGATCGTTCTGCTGCGCTACATGGAACTGGACGGCGG
GCTGCGCAAGGCCATCGGTATCCTGAAAAAACGCACGGGGGATTTCGAGAAGACATTGCGGGAGTTCCAGATAACCCGCG
AGGGTCTGCGCGTCGGTGCACCGCTTTACGGCCTGCAGGGAATCCTGCAGGGAATCCCTTCCAAGATAGCGACCCTTGAT
GCCACCGAGTAG

Upstream 100 bases:

>100_bases
TCGGGGCACATCGTCTATGTCATGCCACGCTCAGGTGAATGAACGCCTCAGGGGCAAGAAGCAGTAGGCGAGATCGGTCG
TTGCATAGGGAGATCATGGC

Downstream 100 bases:

>100_bases
ATTTCCTGCGCTTTTCTCCCAGCCGTCGGGAGAATCCCAGAACCTGCTGCATGTGCAGGTCGCGTTGAGGGCCCGCGCAG
ATCAACGATTGCTGGTGCGG

Product: putative circadian clock protein, KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MNEPHGERISVEIPGLERILRGGFLPGRSYLVSGGPGTGKTTLGLQYLASSADGNGLLISLGESERNLRADALRIGLSLD
GTSVIDLSPGADAEPEAAYTLLEPWEAEGVDIRSRIGALLPDGPPERVFIDALSQLRQLMPDAYQFRKQVMGLLEYLNSA
GTTVLYTAEQGSSADTDLRYLGDGILELEHRENRRILRVLKFRGSGFSEGEHTLRLGDHGMQVFERLMPGEHRRTYVAEE
LPCGIGELDRLSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVYTFEESIGTLRTRCEAIGIPVSDMMAKG
SLSIDEVEPLHYSPDEFAWRVRTEVEQQGARMVMLDSLAGFRQSVRGDDITAHAHALCHYLSNMGVTVLLVNEQSAIAGE
ELRPSEDDINYLADTIVLLRYMELDGGLRKAIGILKKRTGDFEKTLREFQITREGLRVGAPLYGLQGILQGIPSKIATLD
ATE

Sequences:

>Translated_483_residues
MNEPHGERISVEIPGLERILRGGFLPGRSYLVSGGPGTGKTTLGLQYLASSADGNGLLISLGESERNLRADALRIGLSLD
GTSVIDLSPGADAEPEAAYTLLEPWEAEGVDIRSRIGALLPDGPPERVFIDALSQLRQLMPDAYQFRKQVMGLLEYLNSA
GTTVLYTAEQGSSADTDLRYLGDGILELEHRENRRILRVLKFRGSGFSEGEHTLRLGDHGMQVFERLMPGEHRRTYVAEE
LPCGIGELDRLSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVYTFEESIGTLRTRCEAIGIPVSDMMAKG
SLSIDEVEPLHYSPDEFAWRVRTEVEQQGARMVMLDSLAGFRQSVRGDDITAHAHALCHYLSNMGVTVLLVNEQSAIAGE
ELRPSEDDINYLADTIVLLRYMELDGGLRKAIGILKKRTGDFEKTLREFQITREGLRVGAPLYGLQGILQGIPSKIATLD
ATE
>Mature_483_residues
MNEPHGERISVEIPGLERILRGGFLPGRSYLVSGGPGTGKTTLGLQYLASSADGNGLLISLGESERNLRADALRIGLSLD
GTSVIDLSPGADAEPEAAYTLLEPWEAEGVDIRSRIGALLPDGPPERVFIDALSQLRQLMPDAYQFRKQVMGLLEYLNSA
GTTVLYTAEQGSSADTDLRYLGDGILELEHRENRRILRVLKFRGSGFSEGEHTLRLGDHGMQVFERLMPGEHRRTYVAEE
LPCGIGELDRLSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVYTFEESIGTLRTRCEAIGIPVSDMMAKG
SLSIDEVEPLHYSPDEFAWRVRTEVEQQGARMVMLDSLAGFRQSVRGDDITAHAHALCHYLSNMGVTVLLVNEQSAIAGE
ELRPSEDDINYLADTIVLLRYMELDGGLRKAIGILKKRTGDFEKTLREFQITREGLRVGAPLYGLQGILQGIPSKIATLD
ATE

Specific function: Core component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by actin

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 52768; Mature: 52768

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEPHGERISVEIPGLERILRGGFLPGRSYLVSGGPGTGKTTLGLQYLASSADGNGLLIS
CCCCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEE
LGESERNLRADALRIGLSLDGTSVIDLSPGADAEPEAAYTLLEPWEAEGVDIRSRIGALL
ECCCCCCHHHHHEEEEEEECCCEEEEECCCCCCCCCHHEEEECCCCCCCCCHHHHHCCCC
PDGPPERVFIDALSQLRQLMPDAYQFRKQVMGLLEYLNSAGTTVLYTAEQGSSADTDLRY
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
LGDGILELEHRENRRILRVLKFRGSGFSEGEHTLRLGDHGMQVFERLMPGEHRRTYVAEE
HCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCCCCHHHHHHHH
LPCGIGELDRLSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVYTFEESIG
CCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHH
TLRTRCEAIGIPVSDMMAKGSLSIDEVEPLHYSPDEFAWRVRTEVEQQGARMVMLDSLAG
HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHH
FRQSVRGDDITAHAHALCHYLSNMGVTVLLVNEQSAIAGEELRPSEDDINYLADTIVLLR
HHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YMELDGGLRKAIGILKKRTGDFEKTLREFQITREGLRVGAPLYGLQGILQGIPSKIATLD
HHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC
ATE
CCC
>Mature Secondary Structure
MNEPHGERISVEIPGLERILRGGFLPGRSYLVSGGPGTGKTTLGLQYLASSADGNGLLIS
CCCCCCCEEEEECCCHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEE
LGESERNLRADALRIGLSLDGTSVIDLSPGADAEPEAAYTLLEPWEAEGVDIRSRIGALL
ECCCCCCHHHHHEEEEEEECCCEEEEECCCCCCCCCHHEEEECCCCCCCCCHHHHHCCCC
PDGPPERVFIDALSQLRQLMPDAYQFRKQVMGLLEYLNSAGTTVLYTAEQGSSADTDLRY
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHH
LGDGILELEHRENRRILRVLKFRGSGFSEGEHTLRLGDHGMQVFERLMPGEHRRTYVAEE
HCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHCCCCCHHHHHHHH
LPCGIGELDRLSGGGITRGTVTIISGPTGVGKTSLGLQYMHEAARRGERSVVYTFEESIG
CCCCCCCHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHH
TLRTRCEAIGIPVSDMMAKGSLSIDEVEPLHYSPDEFAWRVRTEVEQQGARMVMLDSLAG
HHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHH
FRQSVRGDDITAHAHALCHYLSNMGVTVLLVNEQSAIAGEELRPSEDDINYLADTIVLLR
HHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
YMELDGGLRKAIGILKKRTGDFEKTLREFQITREGLRVGAPLYGLQGILQGIPSKIATLD
HHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHCCCC
ATE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA