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The map label for this gene is slmA [H]

Identifier: 92115101

GI number: 92115101

Start: 3324258

End: 3324875

Strand: Direct

Name: slmA [H]

Synonym: Csal_2985

Alternate gene names: 92115101

Gene position: 3324258-3324875 (Clockwise)

Preceding gene: 92115100

Following gene: 92115106

Centisome position: 89.93

GC content: 66.02

Gene sequence:

>618_bases
ATGACGCAGGAAACACCCAAGCAAACACGCCGGGAGCAGATCCTCCAGGCGCTGGCGCTGATGCTTCAGGAGGATAGCGG
CAAACGAATCACCACCGCCGCGCTGGCGCGTCAGGTCGGCGTCAGTGAAGCCGCTCTCTATCGACACTTCCCCAGCAAGG
CCAGGATGTTCGAAGGGCTGATCGAATTCATCGAGGAGACCCTGTTCGAGCGCATTCGCCGCATTCTCGAGGAAGAGGAA
CACGCCCAGGCACGCTGCCATCATATCCTGACGCTGCTGCTGGGCTTCGCCGAGAAGAACCCGGGGCTGTGCCGGCTGCT
CGGCGGCGACGCCCTCACCGGGGAGACGGCGCGTCTGCGCGTGCGCATGACGCAGCTCTTCGACCGCCTGGAAACCCAGC
TCAAGCAGATCCTGCGCGAGGCCGAGATCCGCGAGGGACTGCGCACCACGCTGCAGGTCTCGGCCGCCGCCAACCTGCTG
CTGGCAGCGGCCGACGGCCGCATCACCCAGTACGTGCGCAGCGACTTCCGCCGTCTGCCCACCGAACACTGGGAAGACCA
GTGGCAAATGCTGTCCGCGCGTCTGCTGGTCGCAGCCCCGCACCCCGCTCAGGTCTGA

Upstream 100 bases:

>100_bases
TTTCTCGCACCCGGGACGGTGCACCGGGAGTGCCGACGATTTGTCGGTATCCCGGCTGCCCATTAGGATGGGCTAACACG
ATTCCAATAGAAGAATATCG

Downstream 100 bases:

>100_bases
ACGCACCAACGAAAACGCCCGGCACAAGGCCGGGCGTTCGCGTGTTCCACTTCTGAATCTGTCTCAAGCAGCCAGGGTAT
CGCCCAGTTGCTGCTTGATC

Product: nucleoid occlusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTQETPKQTRREQILQALALMLQEDSGKRITTAALARQVGVSEAALYRHFPSKARMFEGLIEFIEETLFERIRRILEEEE
HAQARCHHILTLLLGFAEKNPGLCRLLGGDALTGETARLRVRMTQLFDRLETQLKQILREAEIREGLRTTLQVSAAANLL
LAAADGRITQYVRSDFRRLPTEHWEDQWQMLSARLLVAAPHPAQV

Sequences:

>Translated_205_residues
MTQETPKQTRREQILQALALMLQEDSGKRITTAALARQVGVSEAALYRHFPSKARMFEGLIEFIEETLFERIRRILEEEE
HAQARCHHILTLLLGFAEKNPGLCRLLGGDALTGETARLRVRMTQLFDRLETQLKQILREAEIREGLRTTLQVSAAANLL
LAAADGRITQYVRSDFRRLPTEHWEDQWQMLSARLLVAAPHPAQV
>Mature_204_residues
TQETPKQTRREQILQALALMLQEDSGKRITTAALARQVGVSEAALYRHFPSKARMFEGLIEFIEETLFERIRRILEEEEH
AQARCHHILTLLLGFAEKNPGLCRLLGGDALTGETARLRVRMTQLFDRLETQLKQILREAEIREGLRTTLQVSAAANLLL
AAADGRITQYVRSDFRRLPTEHWEDQWQMLSARLLVAAPHPAQV

Specific function: Required for nucleoid occlusion (NO) phenomenon, which cooperates in the proper positioning of the ftsZ/septal ring at midcell during cell division [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082302, Length=194, Percent_Identity=52.0618556701031, Blast_Score=184, Evalue=4e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23449; Mature: 23318

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQETPKQTRREQILQALALMLQEDSGKRITTAALARQVGVSEAALYRHFPSKARMFEGL
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
IEFIEETLFERIRRILEEEEHAQARCHHILTLLLGFAEKNPGLCRLLGGDALTGETARLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
VRMTQLFDRLETQLKQILREAEIREGLRTTLQVSAAANLLLAAADGRITQYVRSDFRRLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
TEHWEDQWQMLSARLLVAAPHPAQV
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TQETPKQTRREQILQALALMLQEDSGKRITTAALARQVGVSEAALYRHFPSKARMFEGL
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHH
IEFIEETLFERIRRILEEEEHAQARCHHILTLLLGFAEKNPGLCRLLGGDALTGETARLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
VRMTQLFDRLETQLKQILREAEIREGLRTTLQVSAAANLLLAAADGRITQYVRSDFRRLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
TEHWEDQWQMLSARLLVAAPHPAQV
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA