Click here to switch to the map view.

The map label for this gene is 92115093

Identifier: 92115093

GI number: 92115093

Start: 3315378

End: 3315950

Strand: Direct

Name: 92115093

Synonym: Csal_2977

Alternate gene names: NA

Gene position: 3315378-3315950 (Clockwise)

Preceding gene: 92115092

Following gene: 92115094

Centisome position: 89.69

GC content: 65.62

Gene sequence:

>573_bases
ATGCGTGAACCCGATTCAGCCTCTCCCGACGCCCTGCACGACATCGCCGCGATTCCGCCCATGGGCGGTGCGTTCGGCCG
CCTGGTCACCGGACTGGACAGACTGTTCGCCCTGCTCGCCTCGCTGGCGCTGGTCGGCATCGCCGCGGTAGTGATCCTGC
AGATCGTCGCCCGCACGGCACTGCCCAGCTCTCCCGCCTGGACCGAAGAGCTGTCGCGCTACCTTTTCATCTACATGGTG
GCGCTGTCCGCCGGCCTGGTATTGCGTCGCGACCGCCACGTCAACGTCGAGCTCTTTCAACAATACCTCGGGCGTCGCGG
TCAGTGGCTGTATCGCGCCCTGATCTGTCTCGCGGTAGGCAGCTTCGCCGCGATGATGCTGCCCTACGCCTGGCAGTATG
CGCAGATCGGCGCCTTCCAGACCTCGCCGACCCTGCGCCTGCCCATGCGCTACGTGTTCTTCTCCACCGTCGTTCTCTTT
GGCTTGACCGCCCTCTATGCGGTGATCGGCGTCATCGAAGCCGGCGTGGCGATCAAGCGCGATGCATCCGCCCAGCGTCC
GGAGCCTCACTGA

Upstream 100 bases:

>100_bases
GCCATTCAGGACCTCTGAATCGAGGCGCTCCGGGTCGGCGGTACCCCGCCGCCCCGGAGACGTCGCTCATTCACCGCAGG
CTTTCAAGCAAGGGATTCCC

Downstream 100 bases:

>100_bases
TGGAAGTCTTCATTCTCTTCAGCGTATTCATCGTGCTGCTGCTGATCGGCATCCCCATCGCCTTTTCCCTGGGCATCGCC
TCGCTCTCCTATCTCCTGCT

Product: tripartite ATP-independent periplasmic transporter DctQ

Products: NA

Alternate protein names: TRAP Dicarboxylate Transporter; TRAP Dicarboxylate Transporter DctQ Subunit; C4-Dicarboxylate Transport System Permease Small Protein; TRAP-Type Transport System Permease Small Protein; TRAP Transporter Small Transmembrane Protein; Trap Dicarboxylate Transporter Dctq Subunit; TRAP Transporter DctQ-Like Membrane Protein; Tripartite ATP-Independent Periplasmic Transporter

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MREPDSASPDALHDIAAIPPMGGAFGRLVTGLDRLFALLASLALVGIAAVVILQIVARTALPSSPAWTEELSRYLFIYMV
ALSAGLVLRRDRHVNVELFQQYLGRRGQWLYRALICLAVGSFAAMMLPYAWQYAQIGAFQTSPTLRLPMRYVFFSTVVLF
GLTALYAVIGVIEAGVAIKRDASAQRPEPH

Sequences:

>Translated_190_residues
MREPDSASPDALHDIAAIPPMGGAFGRLVTGLDRLFALLASLALVGIAAVVILQIVARTALPSSPAWTEELSRYLFIYMV
ALSAGLVLRRDRHVNVELFQQYLGRRGQWLYRALICLAVGSFAAMMLPYAWQYAQIGAFQTSPTLRLPMRYVFFSTVVLF
GLTALYAVIGVIEAGVAIKRDASAQRPEPH
>Mature_190_residues
MREPDSASPDALHDIAAIPPMGGAFGRLVTGLDRLFALLASLALVGIAAVVILQIVARTALPSSPAWTEELSRYLFIYMV
ALSAGLVLRRDRHVNVELFQQYLGRRGQWLYRALICLAVGSFAAMMLPYAWQYAQIGAFQTSPTLRLPMRYVFFSTVVLF
GLTALYAVIGVIEAGVAIKRDASAQRPEPH

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20823; Mature: 20823

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREPDSASPDALHDIAAIPPMGGAFGRLVTGLDRLFALLASLALVGIAAVVILQIVARTA
CCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPSSPAWTEELSRYLFIYMVALSAGLVLRRDRHVNVELFQQYLGRRGQWLYRALICLAVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
SFAAMMLPYAWQYAQIGAFQTSPTLRLPMRYVFFSTVVLFGLTALYAVIGVIEAGVAIKR
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
DASAQRPEPH
CCCCCCCCCC
>Mature Secondary Structure
MREPDSASPDALHDIAAIPPMGGAFGRLVTGLDRLFALLASLALVGIAAVVILQIVARTA
CCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPSSPAWTEELSRYLFIYMVALSAGLVLRRDRHVNVELFQQYLGRRGQWLYRALICLAVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
SFAAMMLPYAWQYAQIGAFQTSPTLRLPMRYVFFSTVVLFGLTALYAVIGVIEAGVAIKR
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC
DASAQRPEPH
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA