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The map label for this gene is ydfH [H]

Identifier: 92115089

GI number: 92115089

Start: 3311219

End: 3311965

Strand: Direct

Name: ydfH [H]

Synonym: Csal_2973

Alternate gene names: 92115089

Gene position: 3311219-3311965 (Clockwise)

Preceding gene: 92115078

Following gene: 92115090

Centisome position: 89.57

GC content: 68.01

Gene sequence:

>747_bases
ATGACGCCATCGCTGCTCGCACTCTGGGAGGAACAGCCCGACGGCAACGTCCGCCAACGGCTTTATGCGGTCCTGCGCCA
GTCGATCATCCGCATGACGCTGGCTCCGGGGCAGGCGCTGTCGGAGAAGGAGATCGCCGAAACCTTCGCGGTCAGCCGCC
AGCCGGTCCGCGAAGCCTTCATTCGTCTCTCGGAGGCAGGCCTGGTCGAGGTGCGCCCCCAACGTGGCACCTACGTGGTG
CATATTTCCCAGGCCGCCGTCATGGAAGCGCGCTTCGTGCGCGAGGCCATCGAGATCGCCGTGGCCCGCGACGCCGCCGA
GCAGGGGCTCGACGCGGCCATCCACGACGAGCTGCATGAACTCATCGCCCGCCAGCAGCGCTGTATCGCCCCCCAGGACC
ACGACCGTTTCTACCGGCTCGACGAGGAATTCCACCGCACCCTGGCGCTGGGCACCGGCCACGATGCCGCCTGGCGCGTG
ACCCAGGAAGTCAAGGCGCAGCTCGACCGGGTGCGTTACCTGAGCGTGCCGGACGCTACCCCCATCACCAAGCTGATCGA
CCAGCACACCCGCATTCTCGAGGGCATCGTCGCGCGCGATGCCGATGCCGCCGAACGGGCCGTGAAGGAACACCTGCGCG
AGATCCTCAGCTCGCTGCCGGCCCTGGTCGAGCGCTTCCCCGACCTTTTCGAGGCCGCCGCGTCCAGCGGTCGTCGAACC
CCGCTGCCCTCTGGAGTCAGTGCATGA

Upstream 100 bases:

>100_bases
TAACATTTCGACCAAGGTCTGACCGACCAAAGTGTCATCGCGCACCACCCTGACCCAACTACCATACTAGTCAGACAACG
AAACGAGGCAGGGTTTTCAC

Downstream 100 bases:

>100_bases
AGATTCGCGACGCCTACACCATCGTCACCTGCCCCGGCCGTAACTTCGTGACGCTCAAGATCGTCACCGAGTCAGGCACC
CACGGCATCGGCGATGCCAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MTPSLLALWEEQPDGNVRQRLYAVLRQSIIRMTLAPGQALSEKEIAETFAVSRQPVREAFIRLSEAGLVEVRPQRGTYVV
HISQAAVMEARFVREAIEIAVARDAAEQGLDAAIHDELHELIARQQRCIAPQDHDRFYRLDEEFHRTLALGTGHDAAWRV
TQEVKAQLDRVRYLSVPDATPITKLIDQHTRILEGIVARDADAAERAVKEHLREILSSLPALVERFPDLFEAAASSGRRT
PLPSGVSA

Sequences:

>Translated_248_residues
MTPSLLALWEEQPDGNVRQRLYAVLRQSIIRMTLAPGQALSEKEIAETFAVSRQPVREAFIRLSEAGLVEVRPQRGTYVV
HISQAAVMEARFVREAIEIAVARDAAEQGLDAAIHDELHELIARQQRCIAPQDHDRFYRLDEEFHRTLALGTGHDAAWRV
TQEVKAQLDRVRYLSVPDATPITKLIDQHTRILEGIVARDADAAERAVKEHLREILSSLPALVERFPDLFEAAASSGRRT
PLPSGVSA
>Mature_247_residues
TPSLLALWEEQPDGNVRQRLYAVLRQSIIRMTLAPGQALSEKEIAETFAVSRQPVREAFIRLSEAGLVEVRPQRGTYVVH
ISQAAVMEARFVREAIEIAVARDAAEQGLDAAIHDELHELIARQQRCIAPQDHDRFYRLDEEFHRTLALGTGHDAAWRVT
QEVKAQLDRVRYLSVPDATPITKLIDQHTRILEGIVARDADAAERAVKEHLREILSSLPALVERFPDLFEAAASSGRRTP
LPSGVSA

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=218, Percent_Identity=42.2018348623853, Blast_Score=172, Evalue=1e-44,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27764; Mature: 27633

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSLLALWEEQPDGNVRQRLYAVLRQSIIRMTLAPGQALSEKEIAETFAVSRQPVREAF
CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
IRLSEAGLVEVRPQRGTYVVHISQAAVMEARFVREAIEIAVARDAAEQGLDAAIHDELHE
HHHHCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LIARQQRCIAPQDHDRFYRLDEEFHRTLALGTGHDAAWRVTQEVKAQLDRVRYLSVPDAT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PITKLIDQHTRILEGIVARDADAAERAVKEHLREILSSLPALVERFPDLFEAAASSGRRT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLPSGVSA
CCCCCCCC
>Mature Secondary Structure 
TPSLLALWEEQPDGNVRQRLYAVLRQSIIRMTLAPGQALSEKEIAETFAVSRQPVREAF
CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
IRLSEAGLVEVRPQRGTYVVHISQAAVMEARFVREAIEIAVARDAAEQGLDAAIHDELHE
HHHHCCCEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LIARQQRCIAPQDHDRFYRLDEEFHRTLALGTGHDAAWRVTQEVKAQLDRVRYLSVPDAT
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PITKLIDQHTRILEGIVARDADAAERAVKEHLREILSSLPALVERFPDLFEAAASSGRRT
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PLPSGVSA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]