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The map label for this gene is secD [H]

Identifier: 92114952

GI number: 92114952

Start: 3163890

End: 3165740

Strand: Direct

Name: secD [H]

Synonym: Csal_2835

Alternate gene names: 92114952

Gene position: 3163890-3165740 (Clockwise)

Preceding gene: 92114951

Following gene: 92114953

Centisome position: 85.59

GC content: 64.78

Gene sequence:

>1851_bases
ATGCTCAACCGTTATCCCCTGTGGAAGTATCTGCTGATACTCGTCGTACTCCTCGTCGGCCTCATCTACGCGTTACCCAA
TCTTTACCCCGCCGACCCCGCCGTTCAGATCAGCAGCACCGCCAGCGGCGCCGCGCTCGACCAAGAGCGTCTCGACCGCC
TGACTCAAGCGCTCGAGGACAAGGACATCGCCATCAAGCAAAGCGAGCTGGATGGCAACAGCGCCCTGATTCGTCTCGAA
CGGGCCGGCCAGCAGGTCGCCGCCCGCGAGATCATCGACGAACGCCTGGGCGACGCCTACACCGTGGCACTCAACCTGGC
CGACGCCACCCCCGGCTGGCTCCAGGCGCTTTCCGCCACGCCCATGAAACTGGGGCTCGACCTGCAGGGCGGGGTGCACT
TCCTGCTCGAGGTGGACATGGATGCGGCCGTCGAGCAGCGCCTCGAAGCCAATGCCAGCGCCGTGCGCGACCTGCTTCGC
GACGAGCGCATCCGGTATCGCGATACCAGCATCGACGGACGCGCGATCACCTTCCAGTTCGCCAACGCCGACGACCGCAA
CGCAGCGCGTGGCTTGATCACCGACCAGTTCCCGGATTTCGAATACAGCACGCCCGACACCGAACGTGGCGCCAGCCTGA
CGATGACGTTCACCGATCAGGCCGTGCAGGACCTGCAGGATTATGCCGTCAATCAGAACCTGACCACGATCCGCAACCGT
GTCAACGAACTCGGCGTCTCGGAGCCTCTGGTGCAGCGCCAGGGCCCCAGCCGCATCGTCGTCGAGCTACCCGGCGTGCA
GGACACCGCCGCCGCCAAGCGCATCGTCGGCGCCACCGCCAATCTGGAATTCCGCCTGGAGGCACGGCCGGACACGCCGG
AGCGCGAGATCGAAACGCTCCCCTTCCGCAATGATGAGGGCCGCAGCGCGGACCTGATGCGTGACATCATCGTGACGGGC
GACCATGTGTCCAGCGCCAGCCGGAGCTTCGACGAAAACAACCGTCCGCAGGTCAACATCAACCTCGACGGTACCGGCGG
CTCGATGATGAGTCGTGCCACGCGCGCCAATATCGGGCGCAACATGGCGGTCGTCTTCATCGAGCACAAGACCCGCACCC
GCACGGTCATGGAAGACGGCGAGGAAGTCGAAAAGCGCGAGGCCTATACCGAGCGCGGCATCATCAGCCTGGCCACCATC
CAGAGCACGCTGGGCAACCGTTTCCGCATCACCGGACTCGAATCCGCCAGCGAGGCCGGTGACCTGGCCCTGCTGCTGCG
CTCCGGGTCTCTCGCGGCACCGATCTACTTCGCCCAGGAGCGCACCATCGGCCCGAGCCTGGGGGCGCAGAACATCGCCC
AGGGCATCATGTCGGTGGAAGTCGGCCTGCTGCTCGTGGTGCTGTTCATGCTGGCGCGCTACAAGGCCTTCGGTGTGGTC
GCCAACGTCTCGCTGGGTCTGAACCTGGTACTGCTGGTCGCCGCCATGTCATTGCTCGGCGCCACGCTGACCCTGCCCGG
CATCGCCGGCATCGTCCTGACCCTGGGCATGGCGGTGGATGCCAACGTCCTGATATTCGAGCGAATACGCGAGGAGCTGC
GCGCCAAGATGCCGGTGCAACAGGCCATTCATACCGGCTTCGAGCGTGCCTTCACCTCGATCGTCGATGCGAACATCACC
ACCTTGCTGGTCGCGGTCATCCTGTTCTCGATCGGCACCGGCCCGGTCAAGGGCTTCGCCGTAACGCTGTCGCTGGGCAT
CCTGACGTCGATGTTCACCGCCATCATGGTGTCGCGCGCCATGATCAACCTCACCATCGGCGGGCGCCCGCTGAAGAAAA
TCTGGATCTGA

Upstream 100 bases:

>100_bases
ATCTGATCCCCTATCAGGAGGGGCGTGAGCGCTCCTCCTCATCGCCACCGGCCCCGGGTCGGTGGTTGTCTTCTGCGTCA
GCAACAAGGACAGGGCTTCC

Downstream 100 bases:

>100_bases
GGAGAGCGAGCGATGCGACAGTTAGATTTCATGGGCAAACGCCGCATAGCCTTCATCGTCTCCGTGCTGATCACGGTGAT
TGCCGTCGGCGCGCTGGCGT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNRYPLWKYLLILVVLLVGLIYALPNLYPADPAVQISSTASGAALDQERLDRLTQALEDKDIAIKQSELDGNSALIRLE
RAGQQVAAREIIDERLGDAYTVALNLADATPGWLQALSATPMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLR
DERIRYRDTSIDGRAITFQFANADDRNAARGLITDQFPDFEYSTPDTERGASLTMTFTDQAVQDLQDYAVNQNLTTIRNR
VNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIVGATANLEFRLEARPDTPEREIETLPFRNDEGRSADLMRDIIVTG
DHVSSASRSFDENNRPQVNINLDGTGGSMMSRATRANIGRNMAVVFIEHKTRTRTVMEDGEEVEKREAYTERGIISLATI
QSTLGNRFRITGLESASEAGDLALLLRSGSLAAPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARYKAFGVV
ANVSLGLNLVLLVAAMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRAKMPVQQAIHTGFERAFTSIVDANIT
TLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTAIMVSRAMINLTIGGRPLKKIWI

Sequences:

>Translated_616_residues
MLNRYPLWKYLLILVVLLVGLIYALPNLYPADPAVQISSTASGAALDQERLDRLTQALEDKDIAIKQSELDGNSALIRLE
RAGQQVAAREIIDERLGDAYTVALNLADATPGWLQALSATPMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLR
DERIRYRDTSIDGRAITFQFANADDRNAARGLITDQFPDFEYSTPDTERGASLTMTFTDQAVQDLQDYAVNQNLTTIRNR
VNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIVGATANLEFRLEARPDTPEREIETLPFRNDEGRSADLMRDIIVTG
DHVSSASRSFDENNRPQVNINLDGTGGSMMSRATRANIGRNMAVVFIEHKTRTRTVMEDGEEVEKREAYTERGIISLATI
QSTLGNRFRITGLESASEAGDLALLLRSGSLAAPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARYKAFGVV
ANVSLGLNLVLLVAAMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRAKMPVQQAIHTGFERAFTSIVDANIT
TLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTAIMVSRAMINLTIGGRPLKKIWI
>Mature_616_residues
MLNRYPLWKYLLILVVLLVGLIYALPNLYPADPAVQISSTASGAALDQERLDRLTQALEDKDIAIKQSELDGNSALIRLE
RAGQQVAAREIIDERLGDAYTVALNLADATPGWLQALSATPMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLR
DERIRYRDTSIDGRAITFQFANADDRNAARGLITDQFPDFEYSTPDTERGASLTMTFTDQAVQDLQDYAVNQNLTTIRNR
VNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIVGATANLEFRLEARPDTPEREIETLPFRNDEGRSADLMRDIIVTG
DHVSSASRSFDENNRPQVNINLDGTGGSMMSRATRANIGRNMAVVFIEHKTRTRTVMEDGEEVEKREAYTERGIISLATI
QSTLGNRFRITGLESASEAGDLALLLRSGSLAAPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARYKAFGVV
ANVSLGLNLVLLVAAMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRAKMPVQQAIHTGFERAFTSIVDANIT
TLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTAIMVSRAMINLTIGGRPLKKIWI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=626, Percent_Identity=49.0415335463259, Blast_Score=562, Evalue=1e-161,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67092; Mature: 67092

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYPLWKYLLILVVLLVGLIYALPNLYPADPAVQISSTASGAALDQERLDRLTQALED
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
KDIAIKQSELDGNSALIRLERAGQQVAAREIIDERLGDAYTVALNLADATPGWLQALSAT
CCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCC
PMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLRDERIRYRDTSIDGRAITFQF
CCEECEECCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCCEEEEEEE
ANADDRNAARGLITDQFPDFEYSTPDTERGASLTMTFTDQAVQDLQDYAVNQNLTTIRNR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHH
VNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIVGATANLEFRLEARPDTPEREIETL
HHHCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCC
PFRNDEGRSADLMRDIIVTGDHVSSASRSFDENNRPQVNINLDGTGGSMMSRATRANIGR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC
NMAVVFIEHKTRTRTVMEDGEEVEKREAYTERGIISLATIQSTLGNRFRITGLESASEAG
CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCEEHHHHHHHHCCEEEEEECCCCCCCC
DLALLLRSGSLAAPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARYKAFGVV
CEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ANVSLGLNLVLLVAAMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRAKMPVQ
EEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
QAIHTGFERAFTSIVDANITTLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTAIMVSRA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
MINLTIGGRPLKKIWI
HEEEEECCCCHHHHCC
>Mature Secondary Structure
MLNRYPLWKYLLILVVLLVGLIYALPNLYPADPAVQISSTASGAALDQERLDRLTQALED
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCC
KDIAIKQSELDGNSALIRLERAGQQVAAREIIDERLGDAYTVALNLADATPGWLQALSAT
CCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCC
PMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLRDERIRYRDTSIDGRAITFQF
CCEECEECCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCCCEEEEEEE
ANADDRNAARGLITDQFPDFEYSTPDTERGASLTMTFTDQAVQDLQDYAVNQNLTTIRNR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCHHHHHHH
VNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIVGATANLEFRLEARPDTPEREIETL
HHHCCCCCCHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHCCC
PFRNDEGRSADLMRDIIVTGDHVSSASRSFDENNRPQVNINLDGTGGSMMSRATRANIGR
CCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC
NMAVVFIEHKTRTRTVMEDGEEVEKREAYTERGIISLATIQSTLGNRFRITGLESASEAG
CEEEEEEECCCHHHHHHHCCHHHHHHHHHHHCCCEEHHHHHHHHCCEEEEEECCCCCCCC
DLALLLRSGSLAAPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARYKAFGVV
CEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ANVSLGLNLVLLVAAMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRAKMPVQ
EEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
QAIHTGFERAFTSIVDANITTLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTAIMVSRA
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHH
MINLTIGGRPLKKIWI
HEEEEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]