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The map label for this gene is yafC [H]

Identifier: 92114917

GI number: 92114917

Start: 3129375

End: 3130250

Strand: Direct

Name: yafC [H]

Synonym: Csal_2800

Alternate gene names: 92114917

Gene position: 3129375-3130250 (Clockwise)

Preceding gene: 92114916

Following gene: 92114918

Centisome position: 84.65

GC content: 67.58

Gene sequence:

>876_bases
ATGAAAAGTCGCTGGGACGATCTGGCACTGTTGCTGGCCGTGGTCGATGCCGGCGGCTTCACCGCCGCCGCCGAGCGCCT
GGGTACCAGCACGGCACGGCTCTCCCGTGCCGTGTCGCGCCTGGAGCGGCAGCTCGACACCACGCTCGTGCAGCGCACCA
CGCGACGACTGGACGTCACCGAGGAAGGGGCATCGTTCATCGCCCAGGCGCGCCAGGCACTCGACACGCTGGAAGCCGCC
GAGGAAGCCCTCACGGTACGCCGGCGCGAGCCGGCCGGTCGCCTGCGCGTGGACGCCGCCACGCCGTTTCTGCTGCATCA
GATCGTGCCGCATCTGGCCGCGTTCCATGCCGCCTACCCCAAGGTACGTCTGGAACTGACGACCCATGAAACCAACATCG
ATCTGATCGAACAGCGTACCGACATCGCCATTCGGATCGGTCGCCTGGAGGATTCGTCGCTGCATGCCCGTCCGCTGGGA
CACAGCCGACGCCGACTGGTGGCCAGCCCCGACTACCTCGCCCGCCACGGCACGCCGGCGACTGCCGAAGCGCTATCGGC
CCATGTACTGCTCGGCTTCACGCACCTGCCGCAACTCAATCGCTGGCCCCTGCGCGGCGGATGCAGCGTCACGCCCACGC
TCGCGTCGAGTAGCGGCGAAGCCCTGCTGCGCATGGCCGAGGCCGGGCTGGGCATTGCCTGCCTGGCGGACTTCCTGACC
CGCGACGCCTGTCAGGCCGGACGCCTGTCGTTCGTGCTCGAGGATGCGATGCTCGAGCGCTACGAACCGATTCAAGCCGT
CTATTACCGCAATACTGCCCTCGAAGGACGTATCGCGGCCTTTCTCGATTTCCTCGCCGGTCGGCTGACGCTCTAG

Upstream 100 bases:

>100_bases
CGTGTACACCGATGAGCCGGTCGATTTCGACGCGCCCAGGCTATAACGCGCGGCGCCATCGGATGAGCGTTCTCGTCTCC
CCCGTGTATCGCGAGGTGAC

Downstream 100 bases:

>100_bases
GCTGATCAGTCGACGCTCTGAACAGACACGATGTCCGCGGCGCCATACCCGACAGCACTGCCTTTTTTGCACATCCTGCA
AGAATGTTTTGCAATTACAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVTEEGASFIAQARQALDTLEAA
EEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYPKVRLELTTHETNIDLIEQRTDIAIRIGRLEDSSLHARPLG
HSRRRLVASPDYLARHGTPATAEALSAHVLLGFTHLPQLNRWPLRGGCSVTPTLASSSGEALLRMAEAGLGIACLADFLT
RDACQAGRLSFVLEDAMLERYEPIQAVYYRNTALEGRIAAFLDFLAGRLTL

Sequences:

>Translated_291_residues
MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVTEEGASFIAQARQALDTLEAA
EEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYPKVRLELTTHETNIDLIEQRTDIAIRIGRLEDSSLHARPLG
HSRRRLVASPDYLARHGTPATAEALSAHVLLGFTHLPQLNRWPLRGGCSVTPTLASSSGEALLRMAEAGLGIACLADFLT
RDACQAGRLSFVLEDAMLERYEPIQAVYYRNTALEGRIAAFLDFLAGRLTL
>Mature_291_residues
MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVTEEGASFIAQARQALDTLEAA
EEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYPKVRLELTTHETNIDLIEQRTDIAIRIGRLEDSSLHARPLG
HSRRRLVASPDYLARHGTPATAEALSAHVLLGFTHLPQLNRWPLRGGCSVTPTLASSSGEALLRMAEAGLGIACLADFLT
RDACQAGRLSFVLEDAMLERYEPIQAVYYRNTALEGRIAAFLDFLAGRLTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=43.1034482758621, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI145693193, Length=293, Percent_Identity=31.740614334471, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=31.9444444444444, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=27.9310344827586, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=28.0821917808219, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=27.4576271186441, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=27.9310344827586, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787589, Length=209, Percent_Identity=29.1866028708134, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790262, Length=240, Percent_Identity=28.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=173, Percent_Identity=28.9017341040462, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=250, Percent_Identity=27.2, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31963; Mature: 31963

Theoretical pI: Translated: 8.13; Mature: 8.13

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVT
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EEGASFIAQARQALDTLEAAEEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCC
KVRLELTTHETNIDLIEQRTDIAIRIGRLEDSSLHARPLGHSRRRLVASPDYLARHGTPA
EEEEEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCHHHHHCCCCH
TAEALSAHVLLGFTHLPQLNRWPLRGGCSVTPTLASSSGEALLRMAEAGLGIACLADFLT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCCCHHHHHHHHH
RDACQAGRLSFVLEDAMLERYEPIQAVYYRNTALEGRIAAFLDFLAGRLTL
HHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSRWDDLALLLAVVDAGGFTAAAERLGTSTARLSRAVSRLERQLDTTLVQRTTRRLDVT
CCCCHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
EEGASFIAQARQALDTLEAAEEALTVRRREPAGRLRVDAATPFLLHQIVPHLAAFHAAYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCC
KVRLELTTHETNIDLIEQRTDIAIRIGRLEDSSLHARPLGHSRRRLVASPDYLARHGTPA
EEEEEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCCCHHHHHCCCCH
TAEALSAHVLLGFTHLPQLNRWPLRGGCSVTPTLASSSGEALLRMAEAGLGIACLADFLT
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHCCCCHHHHHHHHH
RDACQAGRLSFVLEDAMLERYEPIQAVYYRNTALEGRIAAFLDFLAGRLTL
HHHHHCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]