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The map label for this gene is ycfD [H]

Identifier: 92114565

GI number: 92114565

Start: 2752118

End: 2753311

Strand: Direct

Name: ycfD [H]

Synonym: Csal_2447

Alternate gene names: 92114565

Gene position: 2752118-2753311 (Clockwise)

Preceding gene: 92114564

Following gene: 92114566

Centisome position: 74.45

GC content: 67.5

Gene sequence:

>1194_bases
ATGTCCGCCAATACCCCCCTATCGATACTCGGCGGCTTGACCGCCGAGACCTTCCTGCGTGACTACTGGCAGAAAAAACC
GCTGCTGATTCGTGGCGCATTCCCCGACTTCGCGTCGCCGCTTGCCCCCGAGGAACTCGCCGGCCTGGCCTGCGAAGACG
GCATCGAGGCCCGGCTCGTCGAAGCCCAGGGCCCCGACAAGCCCTGGCAGGTCAGCCACGGGCCTTTCGATGACGCCACC
TTCGCGCGCCTGCCCGACCGAGAATGGACCCTGCTGGTTCAGGCCGTCGACCATTACGTCCCCGAGGTCGCAGCCCTGCT
CGATGCCTTCGACTTCCTGCCGCGCTGGCGACTCGACGACGTCATGGTCAGCTACGCGCCTCCCGAAGGCAGCGTGGGGC
CGCACGTGGACAATTACGACGTCTTCCTGCTCCAGGGCAGCGGCCAGCGGCGTTGGCAACTCGGCGGCGAGCAGCCCGAC
GATGCCCCGATCGTCTCGGGCATCGACCTGCGCATGCTCGAGCGCTTCGAGGTGACGGCGGACGAGGACTGGGTGCTCGA
GCCCGGCGACATGCTGTATCTGCCGCCGCGCATCGCTCATCACGGCGTCAGCCAGAGCGCCGACTGCATGACCTATTCGA
TCGGTTTCCGGGCCCCCTCCGCCGACGAGGTCATCACCTCGTTCGCCGACTATCTCGGCGAAATGCAGCCCGATTCCCGG
CGCTACACCGACCCCGATCTCGCTCCCTGCGCGCATGCCGGTCAACTCGACGATCAGGCCATCGCCCGGCTGCGGCGACT
GATGCTCTCGGTCATCGACGACCCGGCACAGATGGCCCAGTGGTTCGGCCGTGTCATGACGCAGCCCAAGTACGTCGATC
AGCTCGCCCCGCTCGACACGCCGATGGACAGCGCGGCCACCGCCGAGGCGCTGGCACAAGGCCGTTACCTGGAACGCGCC
CTGGGCTCGCGCTTCGCCTTTCATGATGAAGACGGCGAGACCACCCTGTTCGTGGATGGCGACGGTCATGCCTGCCCGCC
GCCGCTGGCCCGCCTGCTCGCCGACACCACGCCGCTGCATGCCGCCACCCTGGCAGAACATCTCGACGACGCTGCCCTGT
CGCTGCTCACCGAGTTGCTCAACCGCGGCAGTCTGCAGTGGCAGGACGAGGATGCCGAGGACGAGGAGGCGTGA

Upstream 100 bases:

>100_bases
GTACAGGGAGGCTTTGACAGCGCCCCCCTCGCGCAGGCCTGTCGCCGGAACAGCCTCGACTCCAAGCCACCCACGGTCAG
CATTGCAAGAGGTAGTGCCC

Downstream 100 bases:

>100_bases
CATGACGCTCGAGATCGCAAGCGGTGACTGGGCCACGCTGGGGGCGGCTTGCAGCGCGATTCGCAAGACCGTGTTCATCG
AGGAACAGCAGGTCCCGCAA

Product: cupin 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MSANTPLSILGGLTAETFLRDYWQKKPLLIRGAFPDFASPLAPEELAGLACEDGIEARLVEAQGPDKPWQVSHGPFDDAT
FARLPDREWTLLVQAVDHYVPEVAALLDAFDFLPRWRLDDVMVSYAPPEGSVGPHVDNYDVFLLQGSGQRRWQLGGEQPD
DAPIVSGIDLRMLERFEVTADEDWVLEPGDMLYLPPRIAHHGVSQSADCMTYSIGFRAPSADEVITSFADYLGEMQPDSR
RYTDPDLAPCAHAGQLDDQAIARLRRLMLSVIDDPAQMAQWFGRVMTQPKYVDQLAPLDTPMDSAATAEALAQGRYLERA
LGSRFAFHDEDGETTLFVDGDGHACPPPLARLLADTTPLHAATLAEHLDDAALSLLTELLNRGSLQWQDEDAEDEEA

Sequences:

>Translated_397_residues
MSANTPLSILGGLTAETFLRDYWQKKPLLIRGAFPDFASPLAPEELAGLACEDGIEARLVEAQGPDKPWQVSHGPFDDAT
FARLPDREWTLLVQAVDHYVPEVAALLDAFDFLPRWRLDDVMVSYAPPEGSVGPHVDNYDVFLLQGSGQRRWQLGGEQPD
DAPIVSGIDLRMLERFEVTADEDWVLEPGDMLYLPPRIAHHGVSQSADCMTYSIGFRAPSADEVITSFADYLGEMQPDSR
RYTDPDLAPCAHAGQLDDQAIARLRRLMLSVIDDPAQMAQWFGRVMTQPKYVDQLAPLDTPMDSAATAEALAQGRYLERA
LGSRFAFHDEDGETTLFVDGDGHACPPPLARLLADTTPLHAATLAEHLDDAALSLLTELLNRGSLQWQDEDAEDEEA
>Mature_396_residues
SANTPLSILGGLTAETFLRDYWQKKPLLIRGAFPDFASPLAPEELAGLACEDGIEARLVEAQGPDKPWQVSHGPFDDATF
ARLPDREWTLLVQAVDHYVPEVAALLDAFDFLPRWRLDDVMVSYAPPEGSVGPHVDNYDVFLLQGSGQRRWQLGGEQPDD
APIVSGIDLRMLERFEVTADEDWVLEPGDMLYLPPRIAHHGVSQSADCMTYSIGFRAPSADEVITSFADYLGEMQPDSRR
YTDPDLAPCAHAGQLDDQAIARLRRLMLSVIDDPAQMAQWFGRVMTQPKYVDQLAPLDTPMDSAATAEALAQGRYLERAL
GSRFAFHDEDGETTLFVDGDGHACPPPLARLLADTTPLHAATLAEHLDDAALSLLTELLNRGSLQWQDEDAEDEEA

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=368, Percent_Identity=39.6739130434783, Blast_Score=260, Evalue=1e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 43826; Mature: 43695

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANTPLSILGGLTAETFLRDYWQKKPLLIRGAFPDFASPLAPEELAGLACEDGIEARLV
CCCCCCHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEE
EAQGPDKPWQVSHGPFDDATFARLPDREWTLLVQAVDHYVPEVAALLDAFDFLPRWRLDD
ECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VMVSYAPPEGSVGPHVDNYDVFLLQGSGQRRWQLGGEQPDDAPIVSGIDLRMLERFEVTA
EEEEECCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
DEDWVLEPGDMLYLPPRIAHHGVSQSADCMTYSIGFRAPSADEVITSFADYLGEMQPDSR
CCCEEECCCCEEEECHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
RYTDPDLAPCAHAGQLDDQAIARLRRLMLSVIDDPAQMAQWFGRVMTQPKYVDQLAPLDT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCC
PMDSAATAEALAQGRYLERALGSRFAFHDEDGETTLFVDGDGHACPPPLARLLADTTPLH
CCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHCCCCHH
AATLAEHLDDAALSLLTELLNRGSLQWQDEDAEDEEA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SANTPLSILGGLTAETFLRDYWQKKPLLIRGAFPDFASPLAPEELAGLACEDGIEARLV
CCCCCHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEEE
EAQGPDKPWQVSHGPFDDATFARLPDREWTLLVQAVDHYVPEVAALLDAFDFLPRWRLDD
ECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VMVSYAPPEGSVGPHVDNYDVFLLQGSGQRRWQLGGEQPDDAPIVSGIDLRMLERFEVTA
EEEEECCCCCCCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHCCCC
DEDWVLEPGDMLYLPPRIAHHGVSQSADCMTYSIGFRAPSADEVITSFADYLGEMQPDSR
CCCEEECCCCEEEECHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
RYTDPDLAPCAHAGQLDDQAIARLRRLMLSVIDDPAQMAQWFGRVMTQPKYVDQLAPLDT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHCCCCC
PMDSAATAEALAQGRYLERALGSRFAFHDEDGETTLFVDGDGHACPPPLARLLADTTPLH
CCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCCHHHHHHHHCCCCHH
AATLAEHLDDAALSLLTELLNRGSLQWQDEDAEDEEA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]