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The map label for this gene is opuCB [H]

Identifier: 92114475

GI number: 92114475

Start: 2646116

End: 2646847

Strand: Direct

Name: opuCB [H]

Synonym: Csal_2355

Alternate gene names: 92114475

Gene position: 2646116-2646847 (Clockwise)

Preceding gene: 92114474

Following gene: 92114476

Centisome position: 71.58

GC content: 66.53

Gene sequence:

>732_bases
ATGCCGACGCTGAATCTTGCCGGCGCCGGGCGTTTGCTGGTGCTGGTGGCCGTCTTCCTCGCCGGTGTCTGGAGTCAGTC
CAGCGGCGTGATCGACGACTTCATCTTCTATCTGCCCGACGTCCATTACCTGGCCGTGCAGCACCTGTGGCTGACCGCCA
TGTCCGGCGGCCTGGCGATCCTGGTCGCCATTCCGCTGGGTATCTGGCTGTCGCGCCCCAGCATGGCACGGGTCGCCGAA
TCCATGATGCAGGTCCTCAACGTGGGCACCACCATTCCCACGCTGGCCGTGCTGGCGCTGTCGATGAGCTTTCTCGGCAT
CGGCACCGTCCCGGCGGTCTTCGGGCTCTTCGTAGCCACGCTGCTGCCCATCGCCCGCAACACCTATACCGGGCTCAAGG
GCGTCGATCCGGCCCTCAAGGAGGCCGCGGCGGGGATCGGCATGTCGCCCACCCAGCGCCTGCTGCGGGTCGAACTGCCC
AATGCCTTGTACGTCATCTTCGCCGGCATCCGCACGGCGCTGGCGATCAATATCGGTACGGTGCCTCTGGCCTTCCTGAT
CGGCGCGGGCGGTCTCGGCGAGCTGATCTTCACCGGCATCGACCTCTACGACCCGGTCATGATGCTCTCCGGCGCGATTC
CCACGGCGTTGCTGGCGGTCGTGGTGGACATGCTCATCGCCATCACCGCCTTCGTGGTGGTGCCACGCGGGGTGAATCCG
GGCCGCGCCTAG

Upstream 100 bases:

>100_bases
ACCCATCACCTGGGGTCGCGCTACCGCGCCCATTCCAAGGGCGATGACGGCGTCGCGCTCGACGAGGCCTCTCCGTCATC
GGCCCCCAAGGAGTAAGCCC

Downstream 100 bases:

>100_bases
CGGGCGCCTCGACGGCTCGCCCCCGGCAAGCGACGCCATTCGACAAGCACGATACCGACAATCGACCGTTATCCAGCAAG
CAACGGCTGTCCAACAAGCA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MPTLNLAGAGRLLVLVAVFLAGVWSQSSGVIDDFIFYLPDVHYLAVQHLWLTAMSGGLAILVAIPLGIWLSRPSMARVAE
SMMQVLNVGTTIPTLAVLALSMSFLGIGTVPAVFGLFVATLLPIARNTYTGLKGVDPALKEAAAGIGMSPTQRLLRVELP
NALYVIFAGIRTALAINIGTVPLAFLIGAGGLGELIFTGIDLYDPVMMLSGAIPTALLAVVVDMLIAITAFVVVPRGVNP
GRA

Sequences:

>Translated_243_residues
MPTLNLAGAGRLLVLVAVFLAGVWSQSSGVIDDFIFYLPDVHYLAVQHLWLTAMSGGLAILVAIPLGIWLSRPSMARVAE
SMMQVLNVGTTIPTLAVLALSMSFLGIGTVPAVFGLFVATLLPIARNTYTGLKGVDPALKEAAAGIGMSPTQRLLRVELP
NALYVIFAGIRTALAINIGTVPLAFLIGAGGLGELIFTGIDLYDPVMMLSGAIPTALLAVVVDMLIAITAFVVVPRGVNP
GRA
>Mature_242_residues
PTLNLAGAGRLLVLVAVFLAGVWSQSSGVIDDFIFYLPDVHYLAVQHLWLTAMSGGLAILVAIPLGIWLSRPSMARVAES
MMQVLNVGTTIPTLAVLALSMSFLGIGTVPAVFGLFVATLLPIARNTYTGLKGVDPALKEAAAGIGMSPTQRLLRVELPN
ALYVIFAGIRTALAINIGTVPLAFLIGAGGLGELIFTGIDLYDPVMMLSGAIPTALLAVVVDMLIAITAFVVVPRGVNPG
RA

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=182, Percent_Identity=37.9120879120879, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1788451, Length=197, Percent_Identity=34.5177664974619, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789033, Length=168, Percent_Identity=34.5238095238095, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25320; Mature: 25189

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure 
PTLNLAGAGRLLVLVAVFLAGVWSQSSGVIDDFIFYLPDVHYLAVQHLWLTAMSGGLAI
CCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHH
LVAIPLGIWLSRPSMARVAESMMQVLNVGTTIPTLAVLALSMSFLGIGTVPAVFGLFVAT
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LLPIARNTYTGLKGVDPALKEAAAGIGMSPTQRLLRVELPNALYVIFAGIRTALAINIGT
HHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
VPLAFLIGAGGLGELIFTGIDLYDPVMMLSGAIPTALLAVVVDMLIAITAFVVVPRGVNP
HHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GRA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]