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The map label for this gene is fliR [H]

Identifier: 92114090

GI number: 92114090

Start: 2222219

End: 2223004

Strand: Direct

Name: fliR [H]

Synonym: Csal_1967

Alternate gene names: 92114090

Gene position: 2222219-2223004 (Clockwise)

Preceding gene: 92114089

Following gene: 92114102

Centisome position: 60.11

GC content: 63.49

Gene sequence:

>786_bases
ATGGTACAGGTGACGTTCGCGCAGCTGCATGAATGGCTCACGCTGTTCTTCTGGCCGTTCGTTCGCATCCTGGCGTTCCT
GGCGGCATCGCCGATCTGGAATCAGCACGGCGTGCCGCGCCAGGCGTCCGTGCTGCTGGGCGCCCTGATGGCCTTCGCCA
TCGGCCCCGCCCTGCCTCCCATGCCCGATACGCCCATCGTCTCGATCGGCGGCCTGGGCATACTCATCCAGGAAATGCTG
ATCGGCATTGCGCTGGGCATGGTCTTGCGCGTCACCATCGCCGTGGTGCAAGCCGCCGGCGAGTTCATCGGACTGCAGAT
GGGGCTTGCCTTCGCCACCTTCTTCACGCCGGGCGTCGGCAACAGCATGGTGCTGTCACGCATCTTCCAGATGATCACGC
TATTGATGTTCCTGGCCCTCAACGGGCACTTGATCGCCCTGGAGATACTCGCCAATTCCTTCCAGACGCTCCCCGTCGGC
GGGCCGAGAGTCGACGGAAGCGCGGGCGAGGTCATTGCTCGCTGGGGCGGCGAGATATTCACCTCCGGCGTGTTGATGGC
CCTGCCTCTGATCGTCTCGTTGTTGATCATCAACCTGACGCTCGGCGTGCTCAACCGCGCCTCGCCGCAGCTGTCGATCT
TCTCGATCGGCTTCCCCATGACCCTGACCACCGGCGTGGTGCTGCTGATGACGCTCATGCCGGACCTGCTGCGCTTCCTC
GAGATCCTGTTCAGCAACAGCTTCAGTACCATGCAGGAGGTGGTCCAGCGCCTGGGCAGTGGCTAG

Upstream 100 bases:

>100_bases
CGGCGCCCTGGTCGTCGCAGGCCCCTGGCTGATCCAGACCATCGTCGACTTCACGCGGGAGCTGTTCCTCAACCTGCCCT
CGATGGTCAGCTGACCCCAC

Downstream 100 bases:

>100_bases
AGGGCATCCAATGCACGCATGATCCGCCATTGCCCCCACGCACCGCCTATGAAAGAAAACGCCACGTCCCAAGGGAGTGG
CGTTTTCTCTGCCTGAACGT

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPPMPDTPIVSIGGLGILIQEML
IGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVGNSMVLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVG
GPRVDGSAGEVIARWGGEIFTSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRFL
EILFSNSFSTMQEVVQRLGSG

Sequences:

>Translated_261_residues
MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPPMPDTPIVSIGGLGILIQEML
IGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVGNSMVLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVG
GPRVDGSAGEVIARWGGEIFTSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRFL
EILFSNSFSTMQEVVQRLGSG
>Mature_261_residues
MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPPMPDTPIVSIGGLGILIQEML
IGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVGNSMVLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVG
GPRVDGSAGEVIARWGGEIFTSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRFL
EILFSNSFSTMQEVVQRLGSG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=259, Percent_Identity=45.945945945946, Blast_Score=194, Evalue=7e-51,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27991; Mature: 27991

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPP
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
MPDTPIVSIGGLGILIQEMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVG
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NSMVLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEIF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHH
TSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRFL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EILFSNSFSTMQEVVQRLGSG
HHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MVQVTFAQLHEWLTLFFWPFVRILAFLAASPIWNQHGVPRQASVLLGALMAFAIGPALPP
CCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
MPDTPIVSIGGLGILIQEMLIGIALGMVLRVTIAVVQAAGEFIGLQMGLAFATFFTPGVG
CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NSMVLSRIFQMITLLMFLALNGHLIALEILANSFQTLPVGGPRVDGSAGEVIARWGGEIF
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCHHHH
TSGVLMALPLIVSLLIINLTLGVLNRASPQLSIFSIGFPMTLTTGVVLLMTLMPDLLRFL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
EILFSNSFSTMQEVVQRLGSG
HHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609 [H]