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The map label for this gene is rarD [C]

Identifier: 92114075

GI number: 92114075

Start: 2208838

End: 2209761

Strand: Direct

Name: rarD [C]

Synonym: Csal_1952

Alternate gene names: 92114075

Gene position: 2208838-2209761 (Clockwise)

Preceding gene: 92114072

Following gene: 92114076

Centisome position: 59.75

GC content: 63.96

Gene sequence:

>924_bases
ATGGCCCAAGACGACTCCCGCTCACCACGCGTTGCTTCACCCCCCGACAAGGCGGCCACCAAAGGCGTGGTATTCGGCCT
CACCGCCTATACCCTGTGGGGATGCTTTCCGCTGTTCTTCGCGATGTTCGACGGCGTTCCCGCCTGGGAGATCCTGACCC
ATCGCATCATATGGGCCTGCCTGTTCCTGGTCATGGTCGTCACCCTGCTGGGGCGCTGGCAACCGGTGAAATCGGCACTG
AGCTCTCCCCGGTCGCTGCCCCGCGTGCTCGGTTGCGCACTCTTGATCGGCTTCAACTGGGGACTTTACATCTACGCGGT
GGAAAGCCATCAGGTCTTGCAGGCCAGCCTGGGCTATTTCATGACGCCCCTGATCAACGTGGCACTGGGCATGCTGGTGC
TGCGCGAACGCATGTCGCGCCTGCAAGGCGCCGCGGTGGCCATCGCGGGCATCGCCATCGGCGTGCAACTGGTGGGACTG
GGCGGCCTGCCCTGGATCAGTCTCTGTCTGGCACTGAGTTTCGGCACCTACGGCCTGCTGCGCAAGCAAGTCACGCTGGA
CGGGCTGTCGGGCCTGTTCGTCGAAACCCTGATCCTGATGCCGCTCGGCTTGCTGGCCGTGGCCTGGTTCGAGTTCAGCG
GCCTTTCCCACTTCGGCGGCAGCGTTCGCAACACGACCCTGCTGATCGCCAGCGGTGCTCTGACGGCCCTGCCATTGCTG
GCCTTCGCCGGGGCCGCGCGCCGACTGCGGCTTTCCACGGTGGGATTCTTGATGTACATCAACCCCACCCTGCAATTCCT
GATCGCCCTGCTGATCTTCCAGGAACCGCTGGGGGCCCTGCAACTGGTCACGTTCGTGCTGATCTGGGCCGGATTGCTGC
TTTATTCGCTGTCTGCCTGGCACGGCAGACGCGGCACGACATGA

Upstream 100 bases:

>100_bases
ACTCAGTCTGAAGGCCTGCGTGCCATGGCGGCAAGTCACCTTCACTCATGCTAGATTAGCGCTTTCCGCATCGGCGTCGC
CGCCGCGTTTCGAGGACTTC

Downstream 100 bases:

>100_bases
GGGAAGTGAAAGCGTAGCGGGGCGATCATCGACTAGAGTGAGTCCAGGTCCCAAGGAAACCCGTTTTGATGACGACGCGC
CTCGTACTGGTAGGTGCCGG

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MAQDDSRSPRVASPPDKAATKGVVFGLTAYTLWGCFPLFFAMFDGVPAWEILTHRIIWACLFLVMVVTLLGRWQPVKSAL
SSPRSLPRVLGCALLIGFNWGLYIYAVESHQVLQASLGYFMTPLINVALGMLVLRERMSRLQGAAVAIAGIAIGVQLVGL
GGLPWISLCLALSFGTYGLLRKQVTLDGLSGLFVETLILMPLGLLAVAWFEFSGLSHFGGSVRNTTLLIASGALTALPLL
AFAGAARRLRLSTVGFLMYINPTLQFLIALLIFQEPLGALQLVTFVLIWAGLLLYSLSAWHGRRGTT

Sequences:

>Translated_307_residues
MAQDDSRSPRVASPPDKAATKGVVFGLTAYTLWGCFPLFFAMFDGVPAWEILTHRIIWACLFLVMVVTLLGRWQPVKSAL
SSPRSLPRVLGCALLIGFNWGLYIYAVESHQVLQASLGYFMTPLINVALGMLVLRERMSRLQGAAVAIAGIAIGVQLVGL
GGLPWISLCLALSFGTYGLLRKQVTLDGLSGLFVETLILMPLGLLAVAWFEFSGLSHFGGSVRNTTLLIASGALTALPLL
AFAGAARRLRLSTVGFLMYINPTLQFLIALLIFQEPLGALQLVTFVLIWAGLLLYSLSAWHGRRGTT
>Mature_306_residues
AQDDSRSPRVASPPDKAATKGVVFGLTAYTLWGCFPLFFAMFDGVPAWEILTHRIIWACLFLVMVVTLLGRWQPVKSALS
SPRSLPRVLGCALLIGFNWGLYIYAVESHQVLQASLGYFMTPLINVALGMLVLRERMSRLQGAAVAIAGIAIGVQLVGLG
GLPWISLCLALSFGTYGLLRKQVTLDGLSGLFVETLILMPLGLLAVAWFEFSGLSHFGGSVRNTTLLIASGALTALPLLA
FAGAARRLRLSTVGFLMYINPTLQFLIALLIFQEPLGALQLVTFVLIWAGLLLYSLSAWHGRRGTT

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=292, Percent_Identity=42.4657534246575, Blast_Score=232, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33226; Mature: 33095

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDDSRSPRVASPPDKAATKGVVFGLTAYTLWGCFPLFFAMFDGVPAWEILTHRIIWAC
CCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LFLVMVVTLLGRWQPVKSALSSPRSLPRVLGCALLIGFNWGLYIYAVESHQVLQASLGYF
HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
MTPLINVALGMLVLRERMSRLQGAAVAIAGIAIGVQLVGLGGLPWISLCLALSFGTYGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RKQVTLDGLSGLFVETLILMPLGLLAVAWFEFSGLSHFGGSVRNTTLLIASGALTALPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEECCHHHHHHHH
AFAGAARRLRLSTVGFLMYINPTLQFLIALLIFQEPLGALQLVTFVLIWAGLLLYSLSAW
HHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
HGRRGTT
CCCCCCC
>Mature Secondary Structure 
AQDDSRSPRVASPPDKAATKGVVFGLTAYTLWGCFPLFFAMFDGVPAWEILTHRIIWAC
CCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LFLVMVVTLLGRWQPVKSALSSPRSLPRVLGCALLIGFNWGLYIYAVESHQVLQASLGYF
HHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
MTPLINVALGMLVLRERMSRLQGAAVAIAGIAIGVQLVGLGGLPWISLCLALSFGTYGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RKQVTLDGLSGLFVETLILMPLGLLAVAWFEFSGLSHFGGSVRNTTLLIASGALTALPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEEECCHHHHHHHH
AFAGAARRLRLSTVGFLMYINPTLQFLIALLIFQEPLGALQLVTFVLIWAGLLLYSLSAW
HHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
HGRRGTT
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]