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The map label for this gene is rlpA [H]

Identifier: 92113672

GI number: 92113672

Start: 1760888

End: 1761760

Strand: Direct

Name: rlpA [H]

Synonym: Csal_1548

Alternate gene names: 92113672

Gene position: 1760888-1761760 (Clockwise)

Preceding gene: 92113671

Following gene: 92113673

Centisome position: 47.63

GC content: 66.09

Gene sequence:

>873_bases
ATGAAGTGGGGCGGGGCGCTGCTCTGCATGCTGGTCCTCTTGCTGGCTGGCTGCGCCAGCGAGGGAGGCGGTCGCTACGC
CCAGCAGCGCGACGCCTATCCGGATGCACCGCCGGACGTGTCCCAGGTGCCGGACGCGGTGCCCAAGGTCGAGCCGCGAG
CCAAGAGCGGCAATCGCTCCACCTACGAAGTGTGGGGCAAGACCTACCATGTGCTGTCCGACCCAAGCGGCTACGAAGCG
GAAGGGGAGGCGTCATGGTACGGCACGAAGTTCCAGGGCTATGACACTGCCAGCGGTGAGCCCTATGACATGTACAAGAT
GTCGGCGGCACACCGCACGCTGCCCTTGCCGACCTACGCCCGGGTCACCAATCTCGACAACGGTCGTGACGTCATCGTGC
GCATCAACGATCGCGGTCCGTTCCATGGCGATCGGTTGATCGACCTTTCCTATGCGGCGGCGGCGCGCCTGAAGATTCTC
GGTGGCGGCACGGGGCACGTTCGTGTCGAGGCCATTGACCCCAGGCAATGGGCCGAGCAGCATGAGCGTACCGGATCGTC
GCGCCCGGCATCGCAGGCTGCGCCTTCCACCAAGGACGAGGCCGTCGCGCAGACATCGTCGCCCGCCGCCGAGTCATCAG
CGCGCGAGGCACGTTACGTTCAGGTGGCGGCCTTCGGGTCCGCGACGAATGCCAGGGCGCTCGAGGCGCGCCTGAAAGAT
CGTCTGTCGCGCCCGGTGCGCGTGCGCAAGGAAGCGTCGTTGTACCGGGTCCAGGTCGGGCCGGTTCGCGATGCAGCACA
TATCGATTCCATCCAGGCGGCACTGCAAGAGGCGGGTTTCGACCAGTCGTTTGTGGTGTCCGCTGCCGAGTAA

Upstream 100 bases:

>100_bases
ATTTCTACGTCATCACGCGTTACAACCACAGCCATCTGTACGCCATGGCGGTACACGATCTCGCCGAGCGCATCCAGGCG
GCGCTCGACGGAGACCCGGC

Downstream 100 bases:

>100_bases
CCCCGCTTAGCGAGAAATGTTGTCATGAGAGTGTTCGCTCAATCGTCACTGTTACGCGTTGTTCTACTGGTCACGCTATG
TATCGGCGTCCTCGCGCCAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKWGGALLCMLVLLLAGCASEGGGRYAQQRDAYPDAPPDVSQVPDAVPKVEPRAKSGNRSTYEVWGKTYHVLSDPSGYEA
EGEASWYGTKFQGYDTASGEPYDMYKMSAAHRTLPLPTYARVTNLDNGRDVIVRINDRGPFHGDRLIDLSYAAAARLKIL
GGGTGHVRVEAIDPRQWAEQHERTGSSRPASQAAPSTKDEAVAQTSSPAAESSAREARYVQVAAFGSATNARALEARLKD
RLSRPVRVRKEASLYRVQVGPVRDAAHIDSIQAALQEAGFDQSFVVSAAE

Sequences:

>Translated_290_residues
MKWGGALLCMLVLLLAGCASEGGGRYAQQRDAYPDAPPDVSQVPDAVPKVEPRAKSGNRSTYEVWGKTYHVLSDPSGYEA
EGEASWYGTKFQGYDTASGEPYDMYKMSAAHRTLPLPTYARVTNLDNGRDVIVRINDRGPFHGDRLIDLSYAAAARLKIL
GGGTGHVRVEAIDPRQWAEQHERTGSSRPASQAAPSTKDEAVAQTSSPAAESSAREARYVQVAAFGSATNARALEARLKD
RLSRPVRVRKEASLYRVQVGPVRDAAHIDSIQAALQEAGFDQSFVVSAAE
>Mature_290_residues
MKWGGALLCMLVLLLAGCASEGGGRYAQQRDAYPDAPPDVSQVPDAVPKVEPRAKSGNRSTYEVWGKTYHVLSDPSGYEA
EGEASWYGTKFQGYDTASGEPYDMYKMSAAHRTLPLPTYARVTNLDNGRDVIVRINDRGPFHGDRLIDLSYAAAARLKIL
GGGTGHVRVEAIDPRQWAEQHERTGSSRPASQAAPSTKDEAVAQTSSPAAESSAREARYVQVAAFGSATNARALEARLKD
RLSRPVRVRKEASLYRVQVGPVRDAAHIDSIQAALQEAGFDQSFVVSAAE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=176, Percent_Identity=39.7727272727273, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 31366; Mature: 31366

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWGGALLCMLVLLLAGCASEGGGRYAQQRDAYPDAPPDVSQVPDAVPKVEPRAKSGNRS
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
TYEVWGKTYHVLSDPSGYEAEGEASWYGTKFQGYDTASGEPYDMYKMSAAHRTLPLPTYA
EEEECCCEEEEECCCCCCCCCCCCCEECCEECCCCCCCCCCCHHHHHHHHCCCCCCCCHH
RVTNLDNGRDVIVRINDRGPFHGDRLIDLSYAAAARLKILGGGTGHVRVEAIDPRQWAEQ
HEECCCCCCEEEEEECCCCCCCCCEEEEEHHHCEEEEEEEECCCCEEEEEEECHHHHHHH
HERTGSSRPASQAAPSTKDEAVAQTSSPAAESSAREARYVQVAAFGSATNARALEARLKD
HHHCCCCCCCHHCCCCCCHHHHHHCCCCCHHHHHHHCEEEEEEEECCCCCHHHHHHHHHH
RLSRPVRVRKEASLYRVQVGPVRDAAHIDSIQAALQEAGFDQSFVVSAAE
HHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure
MKWGGALLCMLVLLLAGCASEGGGRYAQQRDAYPDAPPDVSQVPDAVPKVEPRAKSGNRS
CCCCHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
TYEVWGKTYHVLSDPSGYEAEGEASWYGTKFQGYDTASGEPYDMYKMSAAHRTLPLPTYA
EEEECCCEEEEECCCCCCCCCCCCCEECCEECCCCCCCCCCCHHHHHHHHCCCCCCCCHH
RVTNLDNGRDVIVRINDRGPFHGDRLIDLSYAAAARLKILGGGTGHVRVEAIDPRQWAEQ
HEECCCCCCEEEEEECCCCCCCCCEEEEEHHHCEEEEEEEECCCCEEEEEEECHHHHHHH
HERTGSSRPASQAAPSTKDEAVAQTSSPAAESSAREARYVQVAAFGSATNARALEARLKD
HHHCCCCCCCHHCCCCCCHHHHHHCCCCCHHHHHHHCEEEEEEEECCCCCHHHHHHHHHH
RLSRPVRVRKEASLYRVQVGPVRDAAHIDSIQAALQEAGFDQSFVVSAAE
HHCCCEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]