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The map label for this gene is ybiO [H]

Identifier: 92113078

GI number: 92113078

Start: 1067643

End: 1070006

Strand: Direct

Name: ybiO [H]

Synonym: Csal_0950

Alternate gene names: 92113078

Gene position: 1067643-1070006 (Clockwise)

Preceding gene: 92113077

Following gene: 92113079

Centisome position: 28.88

GC content: 65.86

Gene sequence:

>2364_bases
ATGCCCTGGCTTTTTTATGTCATGACACCGGTTGGTTACGGCGCGCGGCTAGGGCACTCTGTGGACATTCATGAAATACG
CGAGGTGAGCATGCTAGGCGGTGCGACACGTTGGGGCCGAGGGCTCGTTCTGCTCTGTGCGCTCCTGTTCTCGGGGTGGG
CATGGGGGCAGGCCGCTTCCCCCTTGTCGTCTCTCGCCGGCGGTGGAGGGCAGCAGGAAGACGCTGCGCCGTCGCCCGAG
CAGGCGCGTGAATCGCTGGATGGCGTGATCTCGATGCTCGAGGATCAGCAGCGCCGCGAGGCCCTGCTGTCGCAACTGCG
TGAGCTGCGCGCCTCGCTGGAGGGCGTGTCGAACGAGAGCGATCCGCGAACGCCTAGCGGGCTGCTGGGTGCCATCGCCG
ACTCGCTGACCTCGCTGGGCGAGTCGGGGGAGGCGGTCACGCCGCTCGAATATTGGCAATCAATGGGCGAGCGGGCGGGC
AATACCCTGATGCAGCGTGTCGCATCGCTGGAGTCGGCACTGCATCTGATCGGCGATTTCGCATGGGTGTTGAGCCTGTG
GGGCGGCAGCGCGGCGTTGCTGGTATTGCTGGGACGAGCCCTGGCCAAGCGCATGAACATGCAGTTGGCGCTGTCGGCCG
AGCCGAGTACCTGGATGCTGATTCGCCACATGATACGCCGCTTGCTGCCCTGGGGGCTGGCCTTTGCCTTGACGCTGGGC
GTGGTGCACGGCATGGCCTCCACACTGGGCATGACCCTGGCGATGGTGATCGCGTACCTCACGCTCTGCGGTATCCTGTT
CACGGCGGTCTGCGAGGTCGTGTTCTCGCTTTTCGCCAGCGGGCACCGTCGGGTGGCGCTGCGTATCCTGCACCGTCGTG
CGCACCGCTGGCTATTCGCCATCGGTGCACTGGTGGCGCTGGGGGACGCGGCGAATGCGTCGGAGCTGCAGGGCGCACTG
GGCGCGCCGCTGGCGGAGCTGGTCTCGATGCTCGCCAATGTCGTGGCGGCGTTGCTGACGGGCGCCTTTGCGGTACGCTT
CAAGCGGCCCGTGAAGCACTTGATCCGCAACCGTCCTTACCGCTATCGGCGCGACAAGCGCGCTTCGAGCGAATTGATTC
AGCTCGTCGGCGCGCTGTGGCATGTGCCGGTATTGCTCATGGTAGTGGTATCGCTGGTGGCGATCCTGACCTCGCAGGGG
GACTCGCGCAGTGTCTTCGCCAAGGCGATCGTCACCGCGGGATTGCTGGTGGTGACCCTGATCGTCAACGGGCTGGTGCA
TCGTCATTCCGAGCAGCCTTCCAAGCAGCGGCGCCAGTCGCAGTATCGGCGACGCCTGGTGCGCTTCGGCTACACGCTGG
CGCACCTGGTCAGCTGGGCGGCGTTCGCCGAGCTGGCGATGCGTGTCTGGGGATTGTCGCTGCTGGCGTTCGGCAGTGAC
GAGGGCATCAGCCAGCGCATAGGCCAGTCGTTGCTCAGCATCGGCATGACGCTGCTGCTGGCCTGGCTGGTCTGGATCCT
CGCCGATACCGCGATCGAGCGCGCGCTACTGTCGTCCAAGCGAGGGCGCAGCGGAAGAGCCCAGAGCACCCGCGCCCAGA
CCATCACGCCGCTGATACGCAATGTCGTCTTCGCGACCATCGTGATCATCGCCTTCATCGTGGCGCTGGCCAATCTGGGC
GTCAACGTGACGCCACTGCTGGCCGGGGCCGGTGTGATCGGCCTGGCAGTGGGGTTCGGGGCGCAGACCCTGGTGCAGGA
TCTGATCACGGGGCTTTTCATCCTCATCGAGGATTCGCTGGCCATCGACGATTTCGTCGATCTGGGCGGTCACATGGGAA
CGGTCGAGGGGCTGAGCCTGCGGACCGTGCGCCTGCGTGACCTGGATGGCATCGTGCATACGATCCCCTTCAGTCAGATC
AAGGGGATCCAGAATTTCTCGCGGGAATTCGGGATTGCCTTGATGCGCGTGCGGGTCGCGCATCACATGAAGGTCGACGA
GGCCATCGCGGTGGTGCGCGACGTGGCCGAAGACCTGCGCCGCGACCCGATGATGCGGCATTATATCTGGTCGCCGCTGG
AGCTGCAGGGTGTCGAGAGCTTCGATGCCGGCGCGGCGATACTGCGTTTCCGCATGCGGACCGCGCCGCTGATGCAGTGG
GACGTGGCGCGAGCCTTCAATCTGCGGCTCAAGCGGCGCTTCGATGAACTGGGACTGGACGTGGCGATGCCGCGCATGAG
CGTGAGCCTGGAGTCTCCCATTCCCGAGGCGTCCGGGGGCACCGCCGCATCGGCCTCGCGCTCGGTGGGCATGCCTCAGG
CCACGGGCGGCCCTGCGGAAGAGGCGCCTCCCGGTACCGGCTGA

Upstream 100 bases:

>100_bases
GGTGTCGCCCCAGCATGACGACGAAGACGGCACGGCAACGTCCGAGTCGACGTCCCCCAGTCGTTGACCTTCGTTGTCAT
CGATCATGGCCAGGGCTTTC

Downstream 100 bases:

>100_bases
GAATGCGCCATGCCGCGGTGACCGGCATGGCGGCGGGGATTGACGCACGTCATGCCGGCACCGTTAAAGGTATGCAGGAA
GCGGCCGATGCTCATAGGAT

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 786

Protein sequence:

>787_residues
MPWLFYVMTPVGYGARLGHSVDIHEIREVSMLGGATRWGRGLVLLCALLFSGWAWGQAASPLSSLAGGGGQQEDAAPSPE
QARESLDGVISMLEDQQRREALLSQLRELRASLEGVSNESDPRTPSGLLGAIADSLTSLGESGEAVTPLEYWQSMGERAG
NTLMQRVASLESALHLIGDFAWVLSLWGGSAALLVLLGRALAKRMNMQLALSAEPSTWMLIRHMIRRLLPWGLAFALTLG
VVHGMASTLGMTLAMVIAYLTLCGILFTAVCEVVFSLFASGHRRVALRILHRRAHRWLFAIGALVALGDAANASELQGAL
GAPLAELVSMLANVVAALLTGAFAVRFKRPVKHLIRNRPYRYRRDKRASSELIQLVGALWHVPVLLMVVVSLVAILTSQG
DSRSVFAKAIVTAGLLVVTLIVNGLVHRHSEQPSKQRRQSQYRRRLVRFGYTLAHLVSWAAFAELAMRVWGLSLLAFGSD
EGISQRIGQSLLSIGMTLLLAWLVWILADTAIERALLSSKRGRSGRAQSTRAQTITPLIRNVVFATIVIIAFIVALANLG
VNVTPLLAGAGVIGLAVGFGAQTLVQDLITGLFILIEDSLAIDDFVDLGGHMGTVEGLSLRTVRLRDLDGIVHTIPFSQI
KGIQNFSREFGIALMRVRVAHHMKVDEAIAVVRDVAEDLRRDPMMRHYIWSPLELQGVESFDAGAAILRFRMRTAPLMQW
DVARAFNLRLKRRFDELGLDVAMPRMSVSLESPIPEASGGTAASASRSVGMPQATGGPAEEAPPGTG

Sequences:

>Translated_787_residues
MPWLFYVMTPVGYGARLGHSVDIHEIREVSMLGGATRWGRGLVLLCALLFSGWAWGQAASPLSSLAGGGGQQEDAAPSPE
QARESLDGVISMLEDQQRREALLSQLRELRASLEGVSNESDPRTPSGLLGAIADSLTSLGESGEAVTPLEYWQSMGERAG
NTLMQRVASLESALHLIGDFAWVLSLWGGSAALLVLLGRALAKRMNMQLALSAEPSTWMLIRHMIRRLLPWGLAFALTLG
VVHGMASTLGMTLAMVIAYLTLCGILFTAVCEVVFSLFASGHRRVALRILHRRAHRWLFAIGALVALGDAANASELQGAL
GAPLAELVSMLANVVAALLTGAFAVRFKRPVKHLIRNRPYRYRRDKRASSELIQLVGALWHVPVLLMVVVSLVAILTSQG
DSRSVFAKAIVTAGLLVVTLIVNGLVHRHSEQPSKQRRQSQYRRRLVRFGYTLAHLVSWAAFAELAMRVWGLSLLAFGSD
EGISQRIGQSLLSIGMTLLLAWLVWILADTAIERALLSSKRGRSGRAQSTRAQTITPLIRNVVFATIVIIAFIVALANLG
VNVTPLLAGAGVIGLAVGFGAQTLVQDLITGLFILIEDSLAIDDFVDLGGHMGTVEGLSLRTVRLRDLDGIVHTIPFSQI
KGIQNFSREFGIALMRVRVAHHMKVDEAIAVVRDVAEDLRRDPMMRHYIWSPLELQGVESFDAGAAILRFRMRTAPLMQW
DVARAFNLRLKRRFDELGLDVAMPRMSVSLESPIPEASGGTAASASRSVGMPQATGGPAEEAPPGTG
>Mature_786_residues
PWLFYVMTPVGYGARLGHSVDIHEIREVSMLGGATRWGRGLVLLCALLFSGWAWGQAASPLSSLAGGGGQQEDAAPSPEQ
ARESLDGVISMLEDQQRREALLSQLRELRASLEGVSNESDPRTPSGLLGAIADSLTSLGESGEAVTPLEYWQSMGERAGN
TLMQRVASLESALHLIGDFAWVLSLWGGSAALLVLLGRALAKRMNMQLALSAEPSTWMLIRHMIRRLLPWGLAFALTLGV
VHGMASTLGMTLAMVIAYLTLCGILFTAVCEVVFSLFASGHRRVALRILHRRAHRWLFAIGALVALGDAANASELQGALG
APLAELVSMLANVVAALLTGAFAVRFKRPVKHLIRNRPYRYRRDKRASSELIQLVGALWHVPVLLMVVVSLVAILTSQGD
SRSVFAKAIVTAGLLVVTLIVNGLVHRHSEQPSKQRRQSQYRRRLVRFGYTLAHLVSWAAFAELAMRVWGLSLLAFGSDE
GISQRIGQSLLSIGMTLLLAWLVWILADTAIERALLSSKRGRSGRAQSTRAQTITPLIRNVVFATIVIIAFIVALANLGV
NVTPLLAGAGVIGLAVGFGAQTLVQDLITGLFILIEDSLAIDDFVDLGGHMGTVEGLSLRTVRLRDLDGIVHTIPFSQIK
GIQNFSREFGIALMRVRVAHHMKVDEAIAVVRDVAEDLRRDPMMRHYIWSPLELQGVESFDAGAAILRFRMRTAPLMQWD
VARAFNLRLKRRFDELGLDVAMPRMSVSLESPIPEASGGTAASASRSVGMPQATGGPAEEAPPGTG

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=497, Percent_Identity=28.9738430583501, Blast_Score=143, Evalue=5e-35,
Organism=Escherichia coli, GI1789291, Length=256, Percent_Identity=26.953125, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 85243; Mature: 85112

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWLFYVMTPVGYGARLGHSVDIHEIREVSMLGGATRWGRGLVLLCALLFSGWAWGQAAS
CCEEEEECCCCCCCHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
PLSSLAGGGGQQEDAAPSPEQARESLDGVISMLEDQQRREALLSQLRELRASLEGVSNES
CHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DPRTPSGLLGAIADSLTSLGESGEAVTPLEYWQSMGERAGNTLMQRVASLESALHLIGDF
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWVLSLWGGSAALLVLLGRALAKRMNMQLALSAEPSTWMLIRHMIRRLLPWGLAFALTLG
HHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVHGMASTLGMTLAMVIAYLTLCGILFTAVCEVVFSLFASGHRRVALRILHRRAHRWLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IGALVALGDAANASELQGALGAPLAELVSMLANVVAALLTGAFAVRFKRPVKHLIRNRPY
HHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYRRDKRASSELIQLVGALWHVPVLLMVVVSLVAILTSQGDSRSVFAKAIVTAGLLVVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IVNGLVHRHSEQPSKQRRQSQYRRRLVRFGYTLAHLVSWAAFAELAMRVWGLSLLAFGSD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EGISQRIGQSLLSIGMTLLLAWLVWILADTAIERALLSSKRGRSGRAQSTRAQTITPLIR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
NVVFATIVIIAFIVALANLGVNVTPLLAGAGVIGLAVGFGAQTLVQDLITGLFILIEDSL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
AIDDFVDLGGHMGTVEGLSLRTVRLRDLDGIVHTIPFSQIKGIQNFSREFGIALMRVRVA
HHHHHHHCCCCCCCCCCCEEEEEEHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
HHMKVDEAIAVVRDVAEDLRRDPMMRHYIWSPLELQGVESFDAGAAILRFRMRTAPLMQW
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCHHHH
DVARAFNLRLKRRFDELGLDVAMPRMSVSLESPIPEASGGTAASASRSVGMPQATGGPAE
HHHHHHHHHHHHHHHHHCCHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EAPPGTG
CCCCCCC
>Mature Secondary Structure 
PWLFYVMTPVGYGARLGHSVDIHEIREVSMLGGATRWGRGLVLLCALLFSGWAWGQAAS
CEEEEECCCCCCCHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCC
PLSSLAGGGGQQEDAAPSPEQARESLDGVISMLEDQQRREALLSQLRELRASLEGVSNES
CHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DPRTPSGLLGAIADSLTSLGESGEAVTPLEYWQSMGERAGNTLMQRVASLESALHLIGDF
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWVLSLWGGSAALLVLLGRALAKRMNMQLALSAEPSTWMLIRHMIRRLLPWGLAFALTLG
HHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
VVHGMASTLGMTLAMVIAYLTLCGILFTAVCEVVFSLFASGHRRVALRILHRRAHRWLFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
IGALVALGDAANASELQGALGAPLAELVSMLANVVAALLTGAFAVRFKRPVKHLIRNRPY
HHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYRRDKRASSELIQLVGALWHVPVLLMVVVSLVAILTSQGDSRSVFAKAIVTAGLLVVTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
IVNGLVHRHSEQPSKQRRQSQYRRRLVRFGYTLAHLVSWAAFAELAMRVWGLSLLAFGSD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EGISQRIGQSLLSIGMTLLLAWLVWILADTAIERALLSSKRGRSGRAQSTRAQTITPLIR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
NVVFATIVIIAFIVALANLGVNVTPLLAGAGVIGLAVGFGAQTLVQDLITGLFILIEDSL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
AIDDFVDLGGHMGTVEGLSLRTVRLRDLDGIVHTIPFSQIKGIQNFSREFGIALMRVRVA
HHHHHHHCCCCCCCCCCCEEEEEEHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
HHMKVDEAIAVVRDVAEDLRRDPMMRHYIWSPLELQGVESFDAGAAILRFRMRTAPLMQW
HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCHHHH
DVARAFNLRLKRRFDELGLDVAMPRMSVSLESPIPEASGGTAASASRSVGMPQATGGPAE
HHHHHHHHHHHHHHHHHCCHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EAPPGTG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]