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The map label for this gene is agmR [H]

Identifier: 92112994

GI number: 92112994

Start: 970986

End: 971648

Strand: Direct

Name: agmR [H]

Synonym: Csal_0866

Alternate gene names: 92112994

Gene position: 970986-971648 (Clockwise)

Preceding gene: 92112993

Following gene: 92113001

Centisome position: 26.27

GC content: 61.69

Gene sequence:

>663_bases
ATGGCTTTTGCCCAGAAATTCATCGTCGCCGATGACCACCCGCTGTTTCGTGCCGCGCTCAACCAGGCGCTGCGCCAAGT
GGCGCCGCAGGCCGAGATCGTCGAAGCCGATACCATGGAGGCGACCACCGACATGGTGCTGCGCCACCCCGATGCCGATC
TGATTCTGCTCGATTTGCACATGCCGGGCGCGCATGGCTTTTCGGGCCTGATTCAGTTGCGCGGTCAGTCTCCCGAGGTG
CCCGTGGTGGTCATCTCGGGAAGCGAAGAGCCGCCGGTGGTGCGCCGTGCCATCGACTACGGGGCCTCGGGGTTCATCCC
CAAGTCGTCGTCGCTGGACGTCATCGCCGAGGCGATTCGCCAAGTGCTGGAAGGTGAGGTGTGGCTCCCCGAAGAGATGG
TGGACATCCTCGGCGAGTCGAACGAAGAAGAGGCGCGCTTTGCCGAAGCCATCGCCTCGCTGACGCCGCAGCAGTTTCGT
GTGCTCAACATGTTGAACGAAGGCTTGCTCAACAAGCAGATCGCCTATGAACTCAATGTCTCAGAGGCGACCATCAAGGC
ACACGTCACGGCCATTCTGCGCAAGCTGGGTGTGCATTCGCGTACCCAGGCGGTGATCGCGGCTCAGAAACTCGAAGTCG
AACCGCCCAAGGTCGAATCCTGA

Upstream 100 bases:

>100_bases
CAGCATGGGGTAACATGCTGAAAACAAGAAGCGAACCCAATGCTTGCCGATGACAATCGCGGCACGACCGTTCGCTCCAG
GGGGATCCGGAGGAGACTCA

Downstream 100 bases:

>100_bases
GGCGCCTGGCGGCGACAGGCCGTCGAAAGGATGAGAAGTCGTTCCTGCCTCGTGGTGGGAGCGGCTTTCTTGTATCCGCA
TCCGGGACACGGAAAACCGC

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MAFAQKFIVADDHPLFRAALNQALRQVAPQAEIVEADTMEATTDMVLRHPDADLILLDLHMPGAHGFSGLIQLRGQSPEV
PVVVISGSEEPPVVRRAIDYGASGFIPKSSSLDVIAEAIRQVLEGEVWLPEEMVDILGESNEEEARFAEAIASLTPQQFR
VLNMLNEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVES

Sequences:

>Translated_220_residues
MAFAQKFIVADDHPLFRAALNQALRQVAPQAEIVEADTMEATTDMVLRHPDADLILLDLHMPGAHGFSGLIQLRGQSPEV
PVVVISGSEEPPVVRRAIDYGASGFIPKSSSLDVIAEAIRQVLEGEVWLPEEMVDILGESNEEEARFAEAIASLTPQQFR
VLNMLNEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVES
>Mature_219_residues
AFAQKFIVADDHPLFRAALNQALRQVAPQAEIVEADTMEATTDMVLRHPDADLILLDLHMPGAHGFSGLIQLRGQSPEVP
VVVISGSEEPPVVRRAIDYGASGFIPKSSSLDVIAEAIRQVLEGEVWLPEEMVDILGESNEEEARFAEAIASLTPQQFRV
LNMLNEGLLNKQIAYELNVSEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVES

Specific function: Positive activator for glycerol metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=204, Percent_Identity=37.7450980392157, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1786747, Length=206, Percent_Identity=29.6116504854369, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788222, Length=192, Percent_Identity=23.4375, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787473, Length=202, Percent_Identity=34.1584158415842, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1789937, Length=201, Percent_Identity=25.8706467661692, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788712, Length=206, Percent_Identity=23.3009708737864, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788546, Length=198, Percent_Identity=25.2525252525253, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24031; Mature: 23900

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFAQKFIVADDHPLFRAALNQALRQVAPQAEIVEADTMEATTDMVLRHPDADLILLDLH
CCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHEECCCCCEEEEEEE
MPGAHGFSGLIQLRGQSPEVPVVVISGSEEPPVVRRAIDYGASGFIPKSSSLDVIAEAIR
CCCCCCCCHHEEECCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QVLEGEVWLPEEMVDILGESNEEEARFAEAIASLTPQQFRVLNMLNEGLLNKQIAYELNV
HHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECC
SEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVES
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AFAQKFIVADDHPLFRAALNQALRQVAPQAEIVEADTMEATTDMVLRHPDADLILLDLH
CCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHEECCCCCEEEEEEE
MPGAHGFSGLIQLRGQSPEVPVVVISGSEEPPVVRRAIDYGASGFIPKSSSLDVIAEAIR
CCCCCCCCHHEEECCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
QVLEGEVWLPEEMVDILGESNEEEARFAEAIASLTPQQFRVLNMLNEGLLNKQIAYELNV
HHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECC
SEATIKAHVTAILRKLGVHSRTQAVIAAQKLEVEPPKVES
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]