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The map label for this gene is yhjC [H]

Identifier: 92112889

GI number: 92112889

Start: 852748

End: 853668

Strand: Direct

Name: yhjC [H]

Synonym: Csal_0760

Alternate gene names: 92112889

Gene position: 852748-853668 (Clockwise)

Preceding gene: 92112887

Following gene: 92112891

Centisome position: 23.07

GC content: 65.69

Gene sequence:

>921_bases
ATGGACCGTTTCGATGCAATGCGGGCGTTTGCGCGGGTGGTGGAAACCGGCAGCTTCACCAAGGCCGCCGACACCCTGCA
CATGAGCAGGACCAGCGTCACGCAGCTCGTGCAGCAACTGGAGGCACGCTTGCGTGTCAGGCTGCTGAACCGCACCACGC
GCAAGGTCAACGTGACCGCCGACGGGGCTGCCTACTATGAGCGCGTGCTGAGGCTGTTGGCCGACCTGGACGATGCCGAG
ACGAGCCTTTCCGGCGCTGCGAGCGAGCCGCGAGGCCGGTTGCGGGTGGACGTCCCCAGCCCGCTGGCGCGCATGATCCT
GATACCGGCGCTGCCTGAGTTCCATGCCCGCTACCCGGACATCCAACTGGACTTGGGCGTCAGCGATCGCATGGTGGACA
TCATCGATGAGAAGGTGGATTGCGTCGTGCGCGGTGGCGAGCTGACCGACCAATCGCTGATGGCACGGCGCATCGGTGAC
TTGCCGCTAGGAGTCTATGCCTCGCCAAGCTATCTGGAACGCGCCGGCTCGCCCGCGCACCCCGGCGACCTGGAGAATAC
CCATCACCGCGTGGTGGGTTTCCTGGGGTCCCGGTTCGGCAAGCCCTTCGCCATGCATCGCCGGGAGGAGAGCATCAAGG
TACAAGGCCGCTACGTCCTGTCGACGGACGATGGCAACAGCTACCTCGCGGCGGGGCTGGCCGGCCTGGGCATCCTGTGG
CTGCCGGACTACATGGCCAGGGAGCATCTCGCCTCGGGTGAGTTGGTGGCCCTTTTCGAGGATTGGCGGCTCGACCCGAT
GCCGCTGTACCTGGCGTATCCGCCCAACCGGCATGTCAGCGCGAAGCTGCGCGTGTTCATCGAGTGGATCGCCGAGCTGA
TGGCGCGGCATGCGCCCGTCATCCATCCACCTCTTTCGTGA

Upstream 100 bases:

>100_bases
GGGCGCGGATAAACGCACCAGTCTGGTCATCACTGTTTGTCGAGCACGAACAATCTCGAGGCACCCGGGGGCGCCATTTC
GGAATCTATTTGGGAAAGCC

Downstream 100 bases:

>100_bases
CGGAGCCCGGCTGATGGCTCTAGACCGTGGTGGTCCGGTCGGCGTCATGCTCGGTCAAGTGTCAGCCCCGGGCGGCGTGC
GATCTCGTTCGTGACGCTCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDRFDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAAYYERVLRLLADLDDAE
TSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPDIQLDLGVSDRMVDIIDEKVDCVVRGGELTDQSLMARRIGD
LPLGVYASPSYLERAGSPAHPGDLENTHHRVVGFLGSRFGKPFAMHRREESIKVQGRYVLSTDDGNSYLAAGLAGLGILW
LPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWIAELMARHAPVIHPPLS

Sequences:

>Translated_306_residues
MDRFDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAAYYERVLRLLADLDDAE
TSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPDIQLDLGVSDRMVDIIDEKVDCVVRGGELTDQSLMARRIGD
LPLGVYASPSYLERAGSPAHPGDLENTHHRVVGFLGSRFGKPFAMHRREESIKVQGRYVLSTDDGNSYLAAGLAGLGILW
LPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWIAELMARHAPVIHPPLS
>Mature_306_residues
MDRFDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTADGAAYYERVLRLLADLDDAE
TSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPDIQLDLGVSDRMVDIIDEKVDCVVRGGELTDQSLMARRIGD
LPLGVYASPSYLERAGSPAHPGDLENTHHRVVGFLGSRFGKPFAMHRREESIKVQGRYVLSTDDGNSYLAAGLAGLGILW
LPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWIAELMARHAPVIHPPLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=37.2093023255814, Blast_Score=198, Evalue=3e-52,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=36.2676056338028, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=33.5593220338983, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=33.2167832167832, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787589, Length=284, Percent_Identity=30.9859154929577, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI87081978, Length=298, Percent_Identity=30.5369127516779, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=26.2237762237762, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1789173, Length=287, Percent_Identity=24.7386759581882, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=24.9134948096886, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=35.3448275862069, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87082132, Length=287, Percent_Identity=24.7386759581882, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=146, Percent_Identity=23.972602739726, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34163; Mature: 34163

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
DGAAYYERVLRLLADLDDAETSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPD
CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHCCCHHHHCCCCC
IQLDLGVSDRMVDIIDEKVDCVVRGGELTDQSLMARRIGDLPLGVYASPSYLERAGSPAH
EEEECCCCHHHHHHHHCCHHEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC
PGDLENTHHRVVGFLGSRFGKPFAMHRREESIKVQGRYVLSTDDGNSYLAAGLAGLGILW
CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHCHHHH
LPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWIAELMARHAPV
CCHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
IHPPLS
CCCCCC
>Mature Secondary Structure
MDRFDAMRAFARVVETGSFTKAADTLHMSRTSVTQLVQQLEARLRVRLLNRTTRKVNVTA
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
DGAAYYERVLRLLADLDDAETSLSGAASEPRGRLRVDVPSPLARMILIPALPEFHARYPD
CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHCCCHHHHCCCCC
IQLDLGVSDRMVDIIDEKVDCVVRGGELTDQSLMARRIGDLPLGVYASPSYLERAGSPAH
EEEECCCCHHHHHHHHCCHHEEEECCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCC
PGDLENTHHRVVGFLGSRFGKPFAMHRREESIKVQGRYVLSTDDGNSYLAAGLAGLGILW
CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHCHHHH
LPDYMAREHLASGELVALFEDWRLDPMPLYLAYPPNRHVSAKLRVFIEWIAELMARHAPV
CCHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
IHPPLS
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]