Click here to switch to the map view.

The map label for this gene is yciO [H]

Identifier: 92112840

GI number: 92112840

Start: 795623

End: 796243

Strand: Direct

Name: yciO [H]

Synonym: Csal_0708

Alternate gene names: 92112840

Gene position: 795623-796243 (Clockwise)

Preceding gene: 92112839

Following gene: 92112843

Centisome position: 21.52

GC content: 64.09

Gene sequence:

>621_bases
ATGACCCAGTTCTTTCAGATCCACCCCGACAATCCCCAGAAGCGACTCATCGATCAGACGCTGACGATACTGCGTGGTGG
CGGCGTGATCGCCTACCCCACTGACTCCGGCTATGCGCTCGGCTGCTGCCTGGGCGATAAAAAGGCCATCGAGAAGATCA
AGTGGCTGCGCTCGCTGGACGACAAGCACAACTTCACCCTGATGTGCTCCGATCTGTCCGAGATCGGTACCTACGCCAAG
GTGGACAACGCCGTGTTCCGCCTGCTCAAGGCGCATACGCCGGGGCCCTACACCTTCATCCTCAACGCCACCAGCGAAGT
GCCGCGCCTGCTGCTGCATCCCAAGCGGCGCTCGATCGGGGTGCGCGTGCCGGACCACCGCATTACCCATGCGCTGCTCG
ACGCCCTGGGCGAGCCGCTGATGAGCGTGACGTTGATCCCGGTGGGCGAGGACCTGCCGATGACCGATCCCGAGGTGATT
CGTGATCGCTTCGGCGCGCATCTCGATGCGGTCATCGACGGCGGGGCCTGCCATCTCGATCCCACCACGGTGGTGGATGT
CCGCGAGATTCCGCCCACGATCGTCCGCGAGGGACGCGGGGACGTCGCGCCGTTCCAGTAA

Upstream 100 bases:

>100_bases
CATCCCAAGCTTGCGACATTCGCCGCGTGAGGCTATTGCTGGTCGAAGCAAGGCACGTCGTTCGGCGTCGCGCTTTCGGC
CCCGCTCCAAGGAGGTAGGC

Downstream 100 bases:

>100_bases
GCACGCGGGCAAGGTGGAAAGCTGCGGTGACAAACCTTCGCGAGGGCGCCATGCTCCCTTCCTTGGGCGCTGCATTCGTC
ATCCATGACGAATGACCCTC

Product: Sua5/YciO/YrdC/YwlC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTQFFQIHPDNPQKRLIDQTLTILRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLDDKHNFTLMCSDLSEIGTYAK
VDNAVFRLLKAHTPGPYTFILNATSEVPRLLLHPKRRSIGVRVPDHRITHALLDALGEPLMSVTLIPVGEDLPMTDPEVI
RDRFGAHLDAVIDGGACHLDPTTVVDVREIPPTIVREGRGDVAPFQ

Sequences:

>Translated_206_residues
MTQFFQIHPDNPQKRLIDQTLTILRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLDDKHNFTLMCSDLSEIGTYAK
VDNAVFRLLKAHTPGPYTFILNATSEVPRLLLHPKRRSIGVRVPDHRITHALLDALGEPLMSVTLIPVGEDLPMTDPEVI
RDRFGAHLDAVIDGGACHLDPTTVVDVREIPPTIVREGRGDVAPFQ
>Mature_205_residues
TQFFQIHPDNPQKRLIDQTLTILRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLDDKHNFTLMCSDLSEIGTYAKV
DNAVFRLLKAHTPGPYTFILNATSEVPRLLLHPKRRSIGVRVPDHRITHALLDALGEPLMSVTLIPVGEDLPMTDPEVIR
DRFGAHLDAVIDGGACHLDPTTVVDVREIPPTIVREGRGDVAPFQ

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=58.0487804878049, Blast_Score=250, Evalue=5e-68,
Organism=Escherichia coli, GI2367210, Length=182, Percent_Identity=27.4725274725275, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22768; Mature: 22636

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQFFQIHPDNPQKRLIDQTLTILRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLD
CCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCC
DKHNFTLMCSDLSEIGTYAKVDNAVFRLLKAHTPGPYTFILNATSEVPRLLLHPKRRSIG
CCCCEEEEECCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCC
VRVPDHRITHALLDALGEPLMSVTLIPVGEDLPMTDPEVIRDRFGAHLDAVIDGGACHLD
CCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCEEECC
PTTVVDVREIPPTIVREGRGDVAPFQ
CCCEEEHHHCCHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TQFFQIHPDNPQKRLIDQTLTILRGGGVIAYPTDSGYALGCCLGDKKAIEKIKWLRSLD
CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCHHHHHHHHHHHHCC
DKHNFTLMCSDLSEIGTYAKVDNAVFRLLKAHTPGPYTFILNATSEVPRLLLHPKRRSIG
CCCCEEEEECCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCC
VRVPDHRITHALLDALGEPLMSVTLIPVGEDLPMTDPEVIRDRFGAHLDAVIDGGACHLD
CCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCHHHHHHHHCCCEEEEEECCEEECC
PTTVVDVREIPPTIVREGRGDVAPFQ
CCCEEEHHHCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]