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The map label for this gene is tsf

Identifier: 92112697

GI number: 92112697

Start: 626443

End: 627312

Strand: Direct

Name: tsf

Synonym: Csal_0564

Alternate gene names: 92112697

Gene position: 626443-627312 (Clockwise)

Preceding gene: 92112696

Following gene: 92112698

Centisome position: 16.95

GC content: 63.1

Gene sequence:

>870_bases
ATGGCAGCTATCAGCGCATCTCTGGTCAAGGAACTGCGTGAGCGCACCGGCCTCGGCATGATGGAGTGCAAGAAAGCGCT
CACCGAAGCCGACGGCGATATCGAAACCGCGATCGAAAACCTGCGCAAGAACTCCGGCTTGAAAGCGGCCAAGAAGGCCG
AGCGCACGGCGGCCGAAGGTGGCGTGGTCACACGCGTTGCCGAAGACGGCACCTACGGCGTGATGCTCGAAGTCAACTCC
GAGACCGACTTCGTGGCACGCGACGACAACTTCACCGCCTTTGCCGAGAAGGTCGTCGGCAAGGTGTTCGAGGCCAAGAG
CGATGATGTCGCCAGCCTGATGGAAGGCGAACTGGAAGAAGCTCGCGAGCAGCTGGTCCAGAAGATCGGCGAGAACATCA
GCGTGCGTCGTGCGGTCGTCGTCGAGGCGCCGGCTGGCGGTGTCGTGGGCGCTTATGTCCACGGTGGCCGCATCGGTGTG
CTGACCGTGCTCAAGGGCGGCAACGCCGAGGTGGCCAAGGATGTCGCCATGCACGTGGCGGCCATCAACCCGAGCGTCGC
GCATCCGGAAGACATGCCGCAGGCGGAACTGGACAGCGAAAAGGCCATCATCCTGGCGCAGCCGGACATGGCCGGCAAGC
CGGCGGAGATCGCCGAGAAGATGGTCCAGGGTCGTCTGAAGAAGTACCTGGCCGAAAACAGCCTGACCGAGCAGCCCTTC
GTCAAGGACCCCAACCAGAGCGTGGCCGAGTACGTGAAGGCTGCGGGTGGCGAAGTGGTCGGCTTCACTCGCTTCGAAGT
GGGTGAGGGCATCGAGAAGGAAGAGGTCGACTTCGCCCAGGAAGTCATGGAACAGGCACGCCGCAGCTAA

Upstream 100 bases:

>100_bases
TCGAGCGCCGCGCGTGCATGTCACGCCATGCCACGATCAAGCCGTGCCGGCTCGGGACAGTGTTTCCAACAGACGTCGAA
CCACATTCAGAGGTATTACC

Downstream 100 bases:

>100_bases
GCTGTCCTGTGTCTGTGACGACGATGGCGTGCGCAACTGCGCACGCCATCGCGTATCCGGCCGTCACGCGGCCACGCCGT
TCCCACCCCCTGCCGATACA

Product: translation elongation factor Ts (EF-Ts)

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MAAISASLVKELRERTGLGMMECKKALTEADGDIETAIENLRKNSGLKAAKKAERTAAEGGVVTRVAEDGTYGVMLEVNS
ETDFVARDDNFTAFAEKVVGKVFEAKSDDVASLMEGELEEAREQLVQKIGENISVRRAVVVEAPAGGVVGAYVHGGRIGV
LTVLKGGNAEVAKDVAMHVAAINPSVAHPEDMPQAELDSEKAIILAQPDMAGKPAEIAEKMVQGRLKKYLAENSLTEQPF
VKDPNQSVAEYVKAAGGEVVGFTRFEVGEGIEKEEVDFAQEVMEQARRS

Sequences:

>Translated_289_residues
MAAISASLVKELRERTGLGMMECKKALTEADGDIETAIENLRKNSGLKAAKKAERTAAEGGVVTRVAEDGTYGVMLEVNS
ETDFVARDDNFTAFAEKVVGKVFEAKSDDVASLMEGELEEAREQLVQKIGENISVRRAVVVEAPAGGVVGAYVHGGRIGV
LTVLKGGNAEVAKDVAMHVAAINPSVAHPEDMPQAELDSEKAIILAQPDMAGKPAEIAEKMVQGRLKKYLAENSLTEQPF
VKDPNQSVAEYVKAAGGEVVGFTRFEVGEGIEKEEVDFAQEVMEQARRS
>Mature_288_residues
AAISASLVKELRERTGLGMMECKKALTEADGDIETAIENLRKNSGLKAAKKAERTAAEGGVVTRVAEDGTYGVMLEVNSE
TDFVARDDNFTAFAEKVVGKVFEAKSDDVASLMEGELEEAREQLVQKIGENISVRRAVVVEAPAGGVVGAYVHGGRIGVL
TVLKGGNAEVAKDVAMHVAAINPSVAHPEDMPQAELDSEKAIILAQPDMAGKPAEIAEKMVQGRLKKYLAENSLTEQPFV
KDPNQSVAEYVKAAGGEVVGFTRFEVGEGIEKEEVDFAQEVMEQARRS

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Homo sapiens, GI171846268, Length=307, Percent_Identity=27.6872964169381, Blast_Score=102, Evalue=5e-22,
Organism=Escherichia coli, GI1786366, Length=289, Percent_Identity=53.9792387543253, Blast_Score=291, Evalue=4e-80,
Organism=Caenorhabditis elegans, GI17561440, Length=297, Percent_Identity=26.2626262626263, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19921466, Length=294, Percent_Identity=28.9115646258503, Blast_Score=93, Evalue=2e-19,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_CHRSD (Q1R032)

Other databases:

- EMBL:   CP000285
- RefSeq:   YP_572625.1
- ProteinModelPortal:   Q1R032
- SMR:   Q1R032
- STRING:   Q1R032
- GeneID:   4026165
- GenomeReviews:   CP000285_GR
- KEGG:   csa:Csal_0564
- NMPDR:   fig|290398.4.peg.231
- eggNOG:   COG0264
- HOGENOM:   HBG713289
- OMA:   YLHGTRI
- BioCyc:   CSAL290398:CSAL_0564-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 30921; Mature: 30790

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAISASLVKELRERTGLGMMECKKALTEADGDIETAIENLRKNSGLKAAKKAERTAAEG
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC
GVVTRVAEDGTYGVMLEVNSETDFVARDDNFTAFAEKVVGKVFEAKSDDVASLMEGELEE
CEEEEEECCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AREQLVQKIGENISVRRAVVVEAPAGGVVGAYVHGGRIGVLTVLKGGNAEVAKDVAMHVA
HHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCHHHHHHHHHHHH
AINPSVAHPEDMPQAELDSEKAIILAQPDMAGKPAEIAEKMVQGRLKKYLAENSLTEQPF
HCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
VKDPNQSVAEYVKAAGGEVVGFTRFEVGEGIEKEEVDFAQEVMEQARRS
CCCCCHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AAISASLVKELRERTGLGMMECKKALTEADGDIETAIENLRKNSGLKAAKKAERTAAEG
CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCC
GVVTRVAEDGTYGVMLEVNSETDFVARDDNFTAFAEKVVGKVFEAKSDDVASLMEGELEE
CEEEEEECCCCEEEEEEECCCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AREQLVQKIGENISVRRAVVVEAPAGGVVGAYVHGGRIGVLTVLKGGNAEVAKDVAMHVA
HHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEECCEEEEEEEEECCCHHHHHHHHHHHH
AINPSVAHPEDMPQAELDSEKAIILAQPDMAGKPAEIAEKMVQGRLKKYLAENSLTEQPF
HCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
VKDPNQSVAEYVKAAGGEVVGFTRFEVGEGIEKEEVDFAQEVMEQARRS
CCCCCHHHHHHHHHCCCCEEEEEEEHHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA