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The map label for this gene is cspA [H]

Identifier: 92112688

GI number: 92112688

Start: 616687

End: 617154

Strand: Direct

Name: cspA [H]

Synonym: Csal_0555

Alternate gene names: 92112688

Gene position: 616687-617154 (Clockwise)

Preceding gene: 92112686

Following gene: 92112696

Centisome position: 16.68

GC content: 58.97

Gene sequence:

>468_bases
ATGAATCGTAAGATATTCCTACGTTGCAGTCTCATCAGTGTCCTGTTGGCCATTCCATCTCCACTGTTGATCGCCCTTTT
CGTGACGCTGACCGGTAGCGTGCTGGAGTTTTCCCTGCTGCTCGAAGCCGATGGTCTCGCCATCGCCTACAGCGCCACGG
CGCTGGCCGTCTTCGCGCTGCTGCTGCTGGGGACCCTGTGCACGCAGATGCTCGCGCCGCAATCGACGCAGTTGGCGCAC
CTGGCGGAGCTGGAAAACGACGATCGCGAGATCGGCGAGGTGAAATGGTTCAACGTCAACAAGGGCTACGGTTTCATCAC
GCGTGATAGCGGCGAAGATGTGTTCGTGCATTTTCGTGCCATTCGCGGCAAGGGGCATCGCACCCTAGCGGAAGGCCAGA
AGGTTCGCTATCACGTCGTCGAGAACGAACGCGGCCTGCAGGCCGATGACGTGACCGTGATTTCCTGA

Upstream 100 bases:

>100_bases
TTCAATGGCGTGGCGTATTCGCTACGCACTCCATGTCGGCTCCACGAGCGCCCCGGCGTTCAGGAGCGTTTCCGTCGGAC
AACAAGAGATATCGAGGTCC

Downstream 100 bases:

>100_bases
GCGGACACTTTTCTTCCCTGCCCTGACGACGCCCCGCCTTGCCCAGGCGGGGCGTCTTGCGTTGCGGCGCCTTATTGGCC
CTGATCCGGCCAGTGGATGG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MNRKIFLRCSLISVLLAIPSPLLIALFVTLTGSVLEFSLLLEADGLAIAYSATALAVFALLLLGTLCTQMLAPQSTQLAH
LAELENDDREIGEVKWFNVNKGYGFITRDSGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENERGLQADDVTVIS

Sequences:

>Translated_155_residues
MNRKIFLRCSLISVLLAIPSPLLIALFVTLTGSVLEFSLLLEADGLAIAYSATALAVFALLLLGTLCTQMLAPQSTQLAH
LAELENDDREIGEVKWFNVNKGYGFITRDSGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENERGLQADDVTVIS
>Mature_155_residues
MNRKIFLRCSLISVLLAIPSPLLIALFVTLTGSVLEFSLLLEADGLAIAYSATALAVFALLLLGTLCTQMLAPQSTQLAH
LAELENDDREIGEVKWFNVNKGYGFITRDSGEDVFVHFRAIRGKGHRTLAEGQKVRYHVVENERGLQADDVTVIS

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI156415990, Length=67, Percent_Identity=49.2537313432836, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI224586882, Length=67, Percent_Identity=49.2537313432836, Blast_Score=64, Evalue=5e-11,
Organism=Homo sapiens, GI34098946, Length=67, Percent_Identity=49.2537313432836, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=54.6875, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=50.7692307692308, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=52.4590163934426, Blast_Score=70, Evalue=6e-14,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=48.5294117647059, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=46.2686567164179, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 17058; Mature: 17058

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRKIFLRCSLISVLLAIPSPLLIALFVTLTGSVLEFSLLLEADGLAIAYSATALAVFAL
CCCEEEEHHHHHHHHHHCCCHHHHHHHHHHCCHHHEEEEEEECCCEEEEEHHHHHHHHHH
LLLGTLCTQMLAPQSTQLAHLAELENDDREIGEVKWFNVNKGYGFITRDSGEDVFVHFRA
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEE
IRGKGHRTLAEGQKVRYHVVENERGLQADDVTVIS
ECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEC
>Mature Secondary Structure
MNRKIFLRCSLISVLLAIPSPLLIALFVTLTGSVLEFSLLLEADGLAIAYSATALAVFAL
CCCEEEEHHHHHHHHHHCCCHHHHHHHHHHCCHHHEEEEEEECCCEEEEEHHHHHHHHHH
LLLGTLCTQMLAPQSTQLAHLAELENDDREIGEVKWFNVNKGYGFITRDSGEDVFVHFRA
HHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCEEEEECCCCCEEEECCCCCEEEEEEEE
IRGKGHRTLAEGQKVRYHVVENERGLQADDVTVIS
ECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]