Click here to switch to the map view.

The map label for this gene is yagT [H]

Identifier: 92112660

GI number: 92112660

Start: 585161

End: 585844

Strand: Direct

Name: yagT [H]

Synonym: Csal_0527

Alternate gene names: 92112660

Gene position: 585161-585844 (Clockwise)

Preceding gene: 92112659

Following gene: 92112661

Centisome position: 15.83

GC content: 64.33

Gene sequence:

>684_bases
ATGGATGACCGCGAACATCTCGAGGCCGAGGTCTCGTATTACGATCCCACGCGACAACCGGCATCGCCGTCGCGGCGCCA
CTTCCTGAAGACTGCGGGGGCTTCCGGGTTGGCGGTGGCCGCTGCGCCGGCGTTGTCATCGGTGAGTTACGCCGGCTCGC
CGGACGATCCCGATACGCAGACCGACGCACCGCCCGCCGAGGGGGCACGGCGCATCACCCTGACCGTCAATGGACGTCGC
CATCAGCTCGATGTCGCACCCAACGTGATCCTGCTCGATGCGTTGCGTCACGGCCTGCAATTGACCGGCACCAAGAAAGG
CTGCGATCACGGTCAGTGCGGCGCCTGCACGATCCTGGTCAACGGCACGTCCATCAATTCCTGCTTGAGCCTCGCCGTGA
CTCACGACGGCGACGAGATCACGACCGTCGAAGGGCTCGAAAAGGGCGGCCAGCAGCATCCGTTGCAGCAGGCGTTTCTC
GAGCATGACGCCTATCAGTGCGGTTACTGCACGGCGGGTCAGATGATGAGCGCGCTGGCAGTCCTGCAGGATGACGACAT
CGGTACCAGCGATGCCGACGTGCGCGAGGCGATGAGCGGCAATATCTGCCGTTGCGGCGCCTACAAGAACATCGTCGCGG
CTATCCAGTCAGCTCGAGGCGCCGTCCAGGGAGGCAAGGCATGA

Upstream 100 bases:

>100_bases
CCCGCAGACTATTTTACGTCGGTGGGCGTGCACCGATGCCCGGTAATCGCTCGCCGAAGACGGACCCCCAGCCCTGGCTG
GCGAATGGTGAGGATACGAC

Downstream 100 bases:

>100_bases
GACATTTCGATTACGCCCGCGCCGAAAGCCCGCAACAAGCTGTCGCGGCGCATGGCAGCGATCGCGATGCCGCCTTTCTG
GCAGGCGGCACCACACTGCT

Product: twin-arginine translocation pathway signal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MDDREHLEAEVSYYDPTRQPASPSRRHFLKTAGASGLAVAAAPALSSVSYAGSPDDPDTQTDAPPAEGARRITLTVNGRR
HQLDVAPNVILLDALRHGLQLTGTKKGCDHGQCGACTILVNGTSINSCLSLAVTHDGDEITTVEGLEKGGQQHPLQQAFL
EHDAYQCGYCTAGQMMSALAVLQDDDIGTSDADVREAMSGNICRCGAYKNIVAAIQSARGAVQGGKA

Sequences:

>Translated_227_residues
MDDREHLEAEVSYYDPTRQPASPSRRHFLKTAGASGLAVAAAPALSSVSYAGSPDDPDTQTDAPPAEGARRITLTVNGRR
HQLDVAPNVILLDALRHGLQLTGTKKGCDHGQCGACTILVNGTSINSCLSLAVTHDGDEITTVEGLEKGGQQHPLQQAFL
EHDAYQCGYCTAGQMMSALAVLQDDDIGTSDADVREAMSGNICRCGAYKNIVAAIQSARGAVQGGKA
>Mature_227_residues
MDDREHLEAEVSYYDPTRQPASPSRRHFLKTAGASGLAVAAAPALSSVSYAGSPDDPDTQTDAPPAEGARRITLTVNGRR
HQLDVAPNVILLDALRHGLQLTGTKKGCDHGQCGACTILVNGTSINSCLSLAVTHDGDEITTVEGLEKGGQQHPLQQAFL
EHDAYQCGYCTAGQMMSALAVLQDDDIGTSDADVREAMSGNICRCGAYKNIVAAIQSARGAVQGGKA

Specific function: Iron-sulfur subunit of the xanthine dehydrogenase complex [H]

COG id: COG2080

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 2Fe-2S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=161, Percent_Identity=32.9192546583851, Blast_Score=67, Evalue=9e-12,
Organism=Escherichia coli, GI1786480, Length=175, Percent_Identity=53.1428571428571, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789232, Length=145, Percent_Identity=42.7586206896552, Blast_Score=116, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17540638, Length=160, Percent_Identity=38.75, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17539860, Length=157, Percent_Identity=33.1210191082803, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI32566215, Length=158, Percent_Identity=33.5443037974684, Blast_Score=85, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17737937, Length=158, Percent_Identity=34.1772151898734, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI24647197, Length=162, Percent_Identity=35.8024691358025, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24647195, Length=162, Percent_Identity=35.8024691358025, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24647201, Length=155, Percent_Identity=36.1290322580645, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24647193, Length=158, Percent_Identity=33.5443037974684, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24647199, Length=154, Percent_Identity=33.1168831168831, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002888
- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR001041
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00111 Fer2; PF01799 Fer2_2 [H]

EC number: NA

Molecular weight: Translated: 23790; Mature: 23790

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDREHLEAEVSYYDPTRQPASPSRRHFLKTAGASGLAVAAAPALSSVSYAGSPDDPDTQ
CCCHHHHEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCCCCCC
TDAPPAEGARRITLTVNGRRHQLDVAPNVILLDALRHGLQLTGTKKGCDHGQCGACTILV
CCCCCCCCCEEEEEEECCCEEEEECCCCEEEHHHHHCCEEECCCCCCCCCCCCCEEEEEE
NGTSINSCLSLAVTHDGDEITTVEGLEKGGQQHPLQQAFLEHDAYQCGYCTAGQMMSALA
ECCCHHHHEEEEEECCCCCEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
VLQDDDIGTSDADVREAMSGNICRCGAYKNIVAAIQSARGAVQGGKA
HHCCCCCCCCCHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDDREHLEAEVSYYDPTRQPASPSRRHFLKTAGASGLAVAAAPALSSVSYAGSPDDPDTQ
CCCHHHHEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCCCCCC
TDAPPAEGARRITLTVNGRRHQLDVAPNVILLDALRHGLQLTGTKKGCDHGQCGACTILV
CCCCCCCCCEEEEEEECCCEEEEECCCCEEEHHHHHCCEEECCCCCCCCCCCCCEEEEEE
NGTSINSCLSLAVTHDGDEITTVEGLEKGGQQHPLQQAFLEHDAYQCGYCTAGQMMSALA
ECCCHHHHEEEEEECCCCCEEEHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
VLQDDDIGTSDADVREAMSGNICRCGAYKNIVAAIQSARGAVQGGKA
HHCCCCCCCCCHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]