| Definition | Chromohalobacter salexigens DSM 3043 chromosome, complete genome. |
|---|---|
| Accession | NC_007963 |
| Length | 3,696,649 |
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The map label for this gene is asmA [H]
Identifier: 92112654
GI number: 92112654
Start: 576102
End: 578471
Strand: Direct
Name: asmA [H]
Synonym: Csal_0521
Alternate gene names: 92112654
Gene position: 576102-578471 (Clockwise)
Preceding gene: 92112653
Following gene: 92112655
Centisome position: 15.58
GC content: 65.78
Gene sequence:
>2370_bases ATGAGAGCGCTGCTGAGAGCATTATTGGCGGTGGTCGGGGTGTTGGCCCTGATCGTGGTCGGCGCCGTGGTTTACATCAC CACCTTCTTTGATCCCAACGACCTCAAGCCGCGCCTCGTCGAGGCGGTGCGCGAACAGAGCGGCCTGGATCTCAACCTGG AAGGGCAGCTGGCGTGGTCGTTCTATCCGCGCCTGGGCTTCAGCGTCGAACAGGCCGAGGCCTGGTTGCCCGAGCAGCCA CATGAAGAGGCGCCCTTCGCGGCATTCGAGCGCGCCGAGGTCAGCGTGGCATTCGCGCCGCTGCTTTCCGGCGAGGTCGC CGTGGAGGGGCTGACACTGGATGGCATGCGCCTCAACCTGGAACGCGACGCCCAGGGCCGGGGGAACTGGCAAGTCCTGC TCGACCGCCTGGAAAACGGCGGTGACCAGGCGGAGCGTGCCCTGGCGCCTGCCTCGGCAGGGCCCGGGCTCGATCAGAAC GCCGACAGCCTGCCGGTGGCGCTGGATATCGCAAGTGTCCAGGTCCGTGACAGCCTCGTGCACTATCGCGATGCGCAGCG CGGCCTCGATCTGACGCTGTCGGGCCTCAGCCTGGACGGCAGTAACGTCAGCCCCGATGCGGCGTTTCCCCTGCAGATGG CGTTCGAGCTCGAACGCCAGGCGCCTGCGCTGACCAGCGACGTCAACTTCAAGAGTCGGGTGCGCCTCGGCCTGAGCGAC GGTCGCTATGAGTTGAACAAGGTGACCCTGGAAACCAGCACGCAGTGGCCGGCGCTCTCCGAGCAGGCGCAGGGCCTCAA CCTGCAGATCGGCCATCTGCTGGCCGAGACCCAGCGGCAGCATTACCGGATCGACGATGCCCGACTGAATACTCGCCTGC ACCATCCTGCCGTGGACGGCAAGCCCCTGGGACTGAGCCTCGGGTTCGACGGCGAGGCCGACCTCGATGCGCAAACGGCA CAGCTGCGCGACATTGCCCTGAGCGGCGATGATGACCTGGACCTCACGGGGACGCTGAGCTTTACCGACCTGCTCGGTGC GCCGGAGTATACCGGCCAGCTCAAATTGTCGCCCCTGTCGCTGCGTGACTGGCTCACGCGTTTCGAGGCCCTGCCGGAAA CCGGCGACGACAAGGCGCTGAGCGAGGTGGCGTTCACCAGCCCGGTGCACGGCGACCTCGAGCGTATCAATTTCTCGAAC CTGAGCCTGCTGCTCGACGGGGAAACCTTCACCGGCGAGCTGGGGGCCGGCTTCGATGGCCAGTGGCTGAGCTTCGACCT GCAAGGCGAGCGTCTCGACCTGGATGCCTACCTTCCGCCTGCCGCCGCGTCCCGTAACGAGGACGATGCAGCTGACGCCG AGGACACGGCGGCCTTGCTCGAGACGCTGGGCGTCGCCCCGGCGTATGCGGCCGCCGAGGGCGCGGAGCTGCTGCCCGTC GAGTGGCTGTCCGGCCTGACGCTCGATGGTCAACTGGCATTGGACACCATGATGCTCAAGGGCATGACGCTGACGGACGT CGCGCTGCGCGCTGCCGGCAGCGACGGCCGGCAGCGCCTGGAATCGCTGACCGCCAAGCTCTACGAAGGCACGCTCGATG CCCAGGGTAGCCTGGACCTGCGCCAGTCGCCCCTGCGCATGGCGTTCACGGAATCGCTCTCCAATGTACAGATCGCGCCG CTCTACGCGGATGCCACTGGCGAGACGTCACCGTTGCGGGGCCGTCTCAACCTGGAGAGCGACGTGACCTCGCGTACCAA CCGGCTCGAATCGCTCAAGCGTCACCTGAATGGCACGGCGTCATTGCGCATCGACGACGGCGCCATGCTCGACGTCAATG TGTCGAAGCAATTGTGCACGGCAGCAGCGTTGCTCGATGGAGAGCGCTCGGATCGCGAGTGGAGCGAGGACACACCCTTC GATACGCTCTCGGCCACGCTCGATATCACCGATGGCGTGGCACGTAACGACGACCTCACGATTCGCATTCCGGGCATCGA GATGACCGGAGCGGGGACGTTCAACATTCCCACCGAGCGTTTCGACTATGACGTCAAGGCGCGCTTCATCGACACGGCGG ACCAGCAGGCGTGCCGTGTCACCTCGCGCCTGCAGCAGGTCAGCCTGCCGGTGCATTGTGAAGGCCGCCTGGGCGAAGCG CCGGAGGAATGGTGCCGCTTCGACCGCGAGGCCTTCCAGGACACGCTGGAGGCACTGGCCGAGGACAAGGCCAAGCGAGA GGTCGGCGAGGAAGTCGACGAGGCGCTGGACAAGCATCTCGACAGCGAGACCGCACGCAAGATCGATGAAACGCTGGGTG AAGGTGCCTCCAAGGAACTCGGGGACAAGTTGCGTGGTCTATTCAAGTGA
Upstream 100 bases:
>100_bases TGATGGGTGACCAGTTGTTGTTGACTCGGCTCGGCTATCATCCCGCTGCCGACGGGGCGTATTACGAATTCCATTCATTA GCGTCAGAGGGAGGGCGCCG
Downstream 100 bases:
>100_bases GCAAAGCCCAAAGCCAGTCCCTGCGCCGACACCCGTCGGCGCTTTTTTTGGTATCCGTCGTGCCTGACACCTTCACACCT GACATCCATGGCTTGACGGC
Product: AsmA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MRALLRALLAVVGVLALIVVGAVVYITTFFDPNDLKPRLVEAVREQSGLDLNLEGQLAWSFYPRLGFSVEQAEAWLPEQP HEEAPFAAFERAEVSVAFAPLLSGEVAVEGLTLDGMRLNLERDAQGRGNWQVLLDRLENGGDQAERALAPASAGPGLDQN ADSLPVALDIASVQVRDSLVHYRDAQRGLDLTLSGLSLDGSNVSPDAAFPLQMAFELERQAPALTSDVNFKSRVRLGLSD GRYELNKVTLETSTQWPALSEQAQGLNLQIGHLLAETQRQHYRIDDARLNTRLHHPAVDGKPLGLSLGFDGEADLDAQTA QLRDIALSGDDDLDLTGTLSFTDLLGAPEYTGQLKLSPLSLRDWLTRFEALPETGDDKALSEVAFTSPVHGDLERINFSN LSLLLDGETFTGELGAGFDGQWLSFDLQGERLDLDAYLPPAAASRNEDDAADAEDTAALLETLGVAPAYAAAEGAELLPV EWLSGLTLDGQLALDTMMLKGMTLTDVALRAAGSDGRQRLESLTAKLYEGTLDAQGSLDLRQSPLRMAFTESLSNVQIAP LYADATGETSPLRGRLNLESDVTSRTNRLESLKRHLNGTASLRIDDGAMLDVNVSKQLCTAAALLDGERSDREWSEDTPF DTLSATLDITDGVARNDDLTIRIPGIEMTGAGTFNIPTERFDYDVKARFIDTADQQACRVTSRLQQVSLPVHCEGRLGEA PEEWCRFDREAFQDTLEALAEDKAKREVGEEVDEALDKHLDSETARKIDETLGEGASKELGDKLRGLFK
Sequences:
>Translated_789_residues MRALLRALLAVVGVLALIVVGAVVYITTFFDPNDLKPRLVEAVREQSGLDLNLEGQLAWSFYPRLGFSVEQAEAWLPEQP HEEAPFAAFERAEVSVAFAPLLSGEVAVEGLTLDGMRLNLERDAQGRGNWQVLLDRLENGGDQAERALAPASAGPGLDQN ADSLPVALDIASVQVRDSLVHYRDAQRGLDLTLSGLSLDGSNVSPDAAFPLQMAFELERQAPALTSDVNFKSRVRLGLSD GRYELNKVTLETSTQWPALSEQAQGLNLQIGHLLAETQRQHYRIDDARLNTRLHHPAVDGKPLGLSLGFDGEADLDAQTA QLRDIALSGDDDLDLTGTLSFTDLLGAPEYTGQLKLSPLSLRDWLTRFEALPETGDDKALSEVAFTSPVHGDLERINFSN LSLLLDGETFTGELGAGFDGQWLSFDLQGERLDLDAYLPPAAASRNEDDAADAEDTAALLETLGVAPAYAAAEGAELLPV EWLSGLTLDGQLALDTMMLKGMTLTDVALRAAGSDGRQRLESLTAKLYEGTLDAQGSLDLRQSPLRMAFTESLSNVQIAP LYADATGETSPLRGRLNLESDVTSRTNRLESLKRHLNGTASLRIDDGAMLDVNVSKQLCTAAALLDGERSDREWSEDTPF DTLSATLDITDGVARNDDLTIRIPGIEMTGAGTFNIPTERFDYDVKARFIDTADQQACRVTSRLQQVSLPVHCEGRLGEA PEEWCRFDREAFQDTLEALAEDKAKREVGEEVDEALDKHLDSETARKIDETLGEGASKELGDKLRGLFK >Mature_789_residues MRALLRALLAVVGVLALIVVGAVVYITTFFDPNDLKPRLVEAVREQSGLDLNLEGQLAWSFYPRLGFSVEQAEAWLPEQP HEEAPFAAFERAEVSVAFAPLLSGEVAVEGLTLDGMRLNLERDAQGRGNWQVLLDRLENGGDQAERALAPASAGPGLDQN ADSLPVALDIASVQVRDSLVHYRDAQRGLDLTLSGLSLDGSNVSPDAAFPLQMAFELERQAPALTSDVNFKSRVRLGLSD GRYELNKVTLETSTQWPALSEQAQGLNLQIGHLLAETQRQHYRIDDARLNTRLHHPAVDGKPLGLSLGFDGEADLDAQTA QLRDIALSGDDDLDLTGTLSFTDLLGAPEYTGQLKLSPLSLRDWLTRFEALPETGDDKALSEVAFTSPVHGDLERINFSN LSLLLDGETFTGELGAGFDGQWLSFDLQGERLDLDAYLPPAAASRNEDDAADAEDTAALLETLGVAPAYAAAEGAELLPV EWLSGLTLDGQLALDTMMLKGMTLTDVALRAAGSDGRQRLESLTAKLYEGTLDAQGSLDLRQSPLRMAFTESLSNVQIAP LYADATGETSPLRGRLNLESDVTSRTNRLESLKRHLNGTASLRIDDGAMLDVNVSKQLCTAAALLDGERSDREWSEDTPF DTLSATLDITDGVARNDDLTIRIPGIEMTGAGTFNIPTERFDYDVKARFIDTADQQACRVTSRLQQVSLPVHCEGRLGEA PEEWCRFDREAFQDTLEALAEDKAKREVGEEVDEALDKHLDSETARKIDETLGEGASKELGDKLRGLFK
Specific function: Involved in the inhibition of assembly of mutant ompF proteins. In general, could be involved in the assembly of outer membrane proteins [H]
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788378, Length=441, Percent_Identity=21.0884353741497, Blast_Score=79, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007844 [H]
Pfam domain/function: PF05170 AsmA [H]
EC number: NA
Molecular weight: Translated: 85811; Mature: 85811
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALLRALLAVVGVLALIVVGAVVYITTFFDPNDLKPRLVEAVREQSGLDLNLEGQLAWS CHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCEEEECCEEEEE FYPRLGFSVEQAEAWLPEQPHEEAPFAAFERAEVSVAFAPLLSGEVAVEGLTLDGMRLNL ECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCEEEEEHHHHCCCEEEEEEEECCEEEEE ERDAQGRGNWQVLLDRLENGGDQAERALAPASAGPGLDQNADSLPVALDIASVQVRDSLV CCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHH HYRDAQRGLDLTLSGLSLDGSNVSPDAAFPLQMAFELERQAPALTSDVNFKSRVRLGLSD HHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHEEEECCCC GRYELNKVTLETSTQWPALSEQAQGLNLQIGHLLAETQRQHYRIDDARLNTRLHHPAVDG CCEEEEEEEEECCCCCCCHHHHHCCCCEEHHHHHHHHHHHHEECCHHHHCCEECCCCCCC KPLGLSLGFDGEADLDAQTAQLRDIALSGDDDLDLTGTLSFTDLLGAPEYTGQLKLSPLS CCCEEEECCCCCCCCCCHHHHHHEEEECCCCCCCEEEEEEHHHHCCCCCCCCEEEECCCH LRDWLTRFEALPETGDDKALSEVAFTSPVHGDLERINFSNLSLLLDGETFTGELGAGFDG HHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCC QWLSFDLQGERLDLDAYLPPAAASRNEDDAADAEDTAALLETLGVAPAYAAAEGAELLPV CEEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCH EWLSGLTLDGQLALDTMMLKGMTLTDVALRAAGSDGRQRLESLTAKLYEGTLDAQGSLDL HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCC RQSPLRMAFTESLSNVQIAPLYADATGETSPLRGRLNLESDVTSRTNRLESLKRHLNGTA CCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCE SLRIDDGAMLDVNVSKQLCTAAALLDGERSDREWSEDTPFDTLSATLDITDGVARNDDLT EEEECCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEEEECCCCCCCCCEE IRIPGIEMTGAGTFNIPTERFDYDVKARFIDTADQQACRVTSRLQQVSLPVHCEGRLGEA EEECCEEEECCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCC PEEWCRFDREAFQDTLEALAEDKAKREVGEEVDEALDKHLDSETARKIDETLGEGASKEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH GDKLRGLFK HHHHHHHCC >Mature Secondary Structure MRALLRALLAVVGVLALIVVGAVVYITTFFDPNDLKPRLVEAVREQSGLDLNLEGQLAWS CHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCEEEECCEEEEE FYPRLGFSVEQAEAWLPEQPHEEAPFAAFERAEVSVAFAPLLSGEVAVEGLTLDGMRLNL ECCCCCCCHHHHHHCCCCCCCCCCCCHHHHHCCEEEEEHHHHCCCEEEEEEEECCEEEEE ERDAQGRGNWQVLLDRLENGGDQAERALAPASAGPGLDQNADSLPVALDIASVQVRDSLV CCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHH HYRDAQRGLDLTLSGLSLDGSNVSPDAAFPLQMAFELERQAPALTSDVNFKSRVRLGLSD HHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHEEEECCCC GRYELNKVTLETSTQWPALSEQAQGLNLQIGHLLAETQRQHYRIDDARLNTRLHHPAVDG CCEEEEEEEEECCCCCCCHHHHHCCCCEEHHHHHHHHHHHHEECCHHHHCCEECCCCCCC KPLGLSLGFDGEADLDAQTAQLRDIALSGDDDLDLTGTLSFTDLLGAPEYTGQLKLSPLS CCCEEEECCCCCCCCCCHHHHHHEEEECCCCCCCEEEEEEHHHHCCCCCCCCEEEECCCH LRDWLTRFEALPETGDDKALSEVAFTSPVHGDLERINFSNLSLLLDGETFTGELGAGFDG HHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHCCCCCEEEEECCCEEECCCCCCCCC QWLSFDLQGERLDLDAYLPPAAASRNEDDAADAEDTAALLETLGVAPAYAAAEGAELLPV CEEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCH EWLSGLTLDGQLALDTMMLKGMTLTDVALRAAGSDGRQRLESLTAKLYEGTLDAQGSLDL HHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCC RQSPLRMAFTESLSNVQIAPLYADATGETSPLRGRLNLESDVTSRTNRLESLKRHLNGTA CCCCHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCE SLRIDDGAMLDVNVSKQLCTAAALLDGERSDREWSEDTPFDTLSATLDITDGVARNDDLT EEEECCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCHHEEEEEECCCCCCCCCEE IRIPGIEMTGAGTFNIPTERFDYDVKARFIDTADQQACRVTSRLQQVSLPVHCEGRLGEA EEECCEEEECCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCC PEEWCRFDREAFQDTLEALAEDKAKREVGEEVDEALDKHLDSETARKIDETLGEGASKEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHH GDKLRGLFK HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7476172; 9097040; 9278503; 1324907 [H]