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The map label for this gene is yobQ [H]

Identifier: 92112525

GI number: 92112525

Start: 438265

End: 438969

Strand: Direct

Name: yobQ [H]

Synonym: Csal_0392

Alternate gene names: 92112525

Gene position: 438265-438969 (Clockwise)

Preceding gene: 92112524

Following gene: 92112527

Centisome position: 11.86

GC content: 70.07

Gene sequence:

>705_bases
ATGCCGCGCGTGGAGGTGCGCGAATATCCGGATCGCGTCTTGACCGATCGTCACGGGTTCCATCAGTGGCTGATCGGGCT
CGAGGGCGTCGTCGAGCTGGAAGCCGGCGGCGAAGGGGCGCACGTGGAGCCCGGGCAATGGGTCGCCATTCCCAGCGGCA
GCGAGCATCACTATCTGGCGCCGGGACGCAACCGCACCCTGGTGCTGGATCTGCCCGTGGCCTGGTGCGAGGCGGCCGGA
CTGGCCGATATCGCGCCGCGTCGCCTGCCGCCTGCGGCGCTGGGCGGGGGCGAGATGCTCCTCGAGGCGCGTCCCGACCA
GTTGGCGGCCCGTCTGCATGCGCTGCTCGCGCAAGGCCGGACGCGGCATGCCTCGCCACGCCTGCGGCTGCTGCACCTGT
TGCCGGCAGTCGAGGCCGACCTGGCGTATCCCTGGCGGATACGCGACTGGGCGGCGCGCTGTCACATGACGGAGGCCGCC
TTCGCACGCCGTTTCCGGCATTTGACCGGGGTCGCCCCGCATGCCTGGTTGACCGCGCGGCGTCTTCAACGTGCCTGTGA
GCTGATGCGCGACCCCCGGCTGACGCTCACCGAGATTGCACAAGCCTGCGGGTTTCACGATAGCGCACACTTCGCACACG
CCTTTCGGGCCCACCACGCATGCTCGCCGCGCCAGTGGCGGCAACGTCAGCCGTCCAGTGTCTAG

Upstream 100 bases:

>100_bases
GCCTAACGTGGGGCTGGCCACGTTGGTGGGCGCCGGCGCCTATGGGGCGGCCGGCGGGTTCCTGGCCGAGTGAGGGAATG
CCATGACGGAAGAGGGCGGC

Downstream 100 bases:

>100_bases
TCGAGGCCCGCGAGTCGCCACAGCATGTCGAGGTAGGGCGGAATCACCAGCGGCGCGGCCACGGTCGTCACGAGAACGGC
GATCGCGCCCTTGGCGGGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPRVEVREYPDRVLTDRHGFHQWLIGLEGVVELEAGGEGAHVEPGQWVAIPSGSEHHYLAPGRNRTLVLDLPVAWCEAAG
LADIAPRRLPPAALGGGEMLLEARPDQLAARLHALLAQGRTRHASPRLRLLHLLPAVEADLAYPWRIRDWAARCHMTEAA
FARRFRHLTGVAPHAWLTARRLQRACELMRDPRLTLTEIAQACGFHDSAHFAHAFRAHHACSPRQWRQRQPSSV

Sequences:

>Translated_234_residues
MPRVEVREYPDRVLTDRHGFHQWLIGLEGVVELEAGGEGAHVEPGQWVAIPSGSEHHYLAPGRNRTLVLDLPVAWCEAAG
LADIAPRRLPPAALGGGEMLLEARPDQLAARLHALLAQGRTRHASPRLRLLHLLPAVEADLAYPWRIRDWAARCHMTEAA
FARRFRHLTGVAPHAWLTARRLQRACELMRDPRLTLTEIAQACGFHDSAHFAHAFRAHHACSPRQWRQRQPSSV
>Mature_233_residues
PRVEVREYPDRVLTDRHGFHQWLIGLEGVVELEAGGEGAHVEPGQWVAIPSGSEHHYLAPGRNRTLVLDLPVAWCEAAGL
ADIAPRRLPPAALGGGEMLLEARPDQLAARLHALLAQGRTRHASPRLRLLHLLPAVEADLAYPWRIRDWAARCHMTEAAF
ARRFRHLTGVAPHAWLTARRLQRACELMRDPRLTLTEIAQACGFHDSAHFAHAFRAHHACSPRQWRQRQPSSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 26276; Mature: 26145

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRVEVREYPDRVLTDRHGFHQWLIGLEGVVELEAGGEGAHVEPGQWVAIPSGSEHHYLA
CCCCCCHHCCHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCCCCCEEC
PGRNRTLVLDLPVAWCEAAGLADIAPRRLPPAALGGGEMLLEARPDQLAARLHALLAQGR
CCCCCEEEEECCHHHHHHCCCHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC
TRHASPRLRLLHLLPAVEADLAYPWRIRDWAARCHMTEAAFARRFRHLTGVAPHAWLTAR
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RLQRACELMRDPRLTLTEIAQACGFHDSAHFAHAFRAHHACSPRQWRQRQPSSV
HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCC
>Mature Secondary Structure 
PRVEVREYPDRVLTDRHGFHQWLIGLEGVVELEAGGEGAHVEPGQWVAIPSGSEHHYLA
CCCCCHHCCHHHHHCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCCCCCEEC
PGRNRTLVLDLPVAWCEAAGLADIAPRRLPPAALGGGEMLLEARPDQLAARLHALLAQGR
CCCCCEEEEECCHHHHHHCCCHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCC
TRHASPRLRLLHLLPAVEADLAYPWRIRDWAARCHMTEAAFARRFRHLTGVAPHAWLTAR
CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
RLQRACELMRDPRLTLTEIAQACGFHDSAHFAHAFRAHHACSPRQWRQRQPSSV
HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]