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The map label for this gene is ydcN [H]

Identifier: 92112522

GI number: 92112522

Start: 436653

End: 437189

Strand: Direct

Name: ydcN [H]

Synonym: Csal_0389

Alternate gene names: 92112522

Gene position: 436653-437189 (Clockwise)

Preceding gene: 92112521

Following gene: 92112523

Centisome position: 11.81

GC content: 67.6

Gene sequence:

>537_bases
ATGCCATCACCGACTCCCGTCATCGTCGCCAACCTGCGTCGTCTCCGCGAGGCGCGCGGTTACTCGCTGAGCGCGCTGGC
CGAACGGGCGGCGATCAGCAAGTCGACGCTCTCGCAGCTCGAGGCCGGTCACGGCAATCCCACCATCGAAACGCTCTGGA
CCCTGGCCAATACGCTGGGGGTGACGTTCAGCGAGCTGCTGGCCGAGAAAACAGGCGGTGTGACGGTCGGCGAGCCCGGT
GGCGGGCAGGTGCAGGTCGTGGCCCGGGGACGGCAATCGCCGCGGGTCGAGGTGTATCTCATGCAGCTCGCGTCGGGCGA
AATCAAGCATTCGCGAGGCCATCCGCGTGGCGTGCGCGAGCGCGTCATGGTGGTGGAGGGAACACTGCGCGTGGGCACGC
CCCGGGCGCTGGCCGTGTGCCGCGCGGGCGAACAGCATGAGTTCGACGCGGATCTCGACCATCGCTACGAAGCCTTGCTG
GGCGCAACGCAGGCGATGGTGACGATTCTCTATCCGCAGCAGTGGGAGGACGCATGA

Upstream 100 bases:

>100_bases
GGTGGCGTGATCGGGCAGGCAAGGGCGCCTTCGGGCGCCCTTGTTTTTTGATCTGTCGTTCGTTAAAAAGAACGAAACCG
TTCTTTTTAATGGATGCCGC

Downstream 100 bases:

>100_bases
GCGATGATGCGGTAGCGGTCTCGGCGTGGCGGTCGGGCCGGCGCGGCCTGCGTGACAGCGTGTCGCTGGCGGTGGGGTAT
GCGCCGATCGCGTTTTCGTT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MPSPTPVIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLGVTFSELLAEKTGGVTVGEPG
GGQVQVVARGRQSPRVEVYLMQLASGEIKHSRGHPRGVRERVMVVEGTLRVGTPRALAVCRAGEQHEFDADLDHRYEALL
GATQAMVTILYPQQWEDA

Sequences:

>Translated_178_residues
MPSPTPVIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLGVTFSELLAEKTGGVTVGEPG
GGQVQVVARGRQSPRVEVYLMQLASGEIKHSRGHPRGVRERVMVVEGTLRVGTPRALAVCRAGEQHEFDADLDHRYEALL
GATQAMVTILYPQQWEDA
>Mature_177_residues
PSPTPVIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLGVTFSELLAEKTGGVTVGEPGG
GQVQVVARGRQSPRVEVYLMQLASGEIKHSRGHPRGVRERVMVVEGTLRVGTPRALAVCRAGEQHEFDADLDHRYEALLG
ATQAMVTILYPQQWEDA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=148, Percent_Identity=34.4594594594595, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 19265; Mature: 19134

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSPTPVIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLG
CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VTFSELLAEKTGGVTVGEPGGGQVQVVARGRQSPRVEVYLMQLASGEIKHSRGHPRGVRE
HHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCEEEEEEEHHCCCCCCCCCCCCCHHH
RVMVVEGTLRVGTPRALAVCRAGEQHEFDADLDHRYEALLGATQAMVTILYPQQWEDA
EEEEEECEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCC
>Mature Secondary Structure 
PSPTPVIVANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTLG
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VTFSELLAEKTGGVTVGEPGGGQVQVVARGRQSPRVEVYLMQLASGEIKHSRGHPRGVRE
HHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCEEEEEEEHHCCCCCCCCCCCCCHHH
RVMVVEGTLRVGTPRALAVCRAGEQHEFDADLDHRYEALLGATQAMVTILYPQQWEDA
EEEEEECEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]