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The map label for this gene is ygbT [H]

Identifier: 92112367

GI number: 92112367

Start: 263339

End: 264259

Strand: Direct

Name: ygbT [H]

Synonym: Csal_0232

Alternate gene names: 92112367

Gene position: 263339-264259 (Clockwise)

Preceding gene: 92112366

Following gene: 92112368

Centisome position: 7.12

GC content: 60.26

Gene sequence:

>921_bases
ATGGGCTTCATTCCATTGAAGCCCATCCCTGTGAAAGATCGCATGTCGATGATCTTCGTCGGGATGGGGCAGATCGACGT
GCGTGATGGTGCCTTCGTCGTCATCGATGATGTGAATGGCGAGCGCATGCACATTCCCGTGGGGTCTGTCGCGTGCTTGC
TGCTCGAGCCCGGTACTCGCGTGTCGCACGCTGCTGTCAAACTCGCGTCAGTGGTGGGTACGCTGTTGATTTGGGTCGGT
GATGCCGGCGTGCGTCTATATAGCGCGGGTCAGCCTGGCGGCGCGCGTTCGGACAAGCTGCTCTATCAAGCGCAGTTGGC
ACGGGATGAAAAACTGCGGCTGAAAGTCGTGCGCAAGATGTTCGAGCTTCGTTTCGGCGAAGAGCCGCCCTCGCGGCGTA
GCGTCGATCAATTGCGAGGTATGGAAGGGGCTCGGGTACGCAAGACATACCAGCTTCTTGCCAAGCAGTATGGCGTCAAG
TGGCACGGGCGTCGCTATGACCCGACTCAATGGGATGCTTCCGATGTGGCCAACCAGTGCCTTTCGGCCGCGACCGCCTG
TCTTTACGGCATCACGGAAGCCGCCATCCTGGCAGCCGGTTATGCGCCGGCGATTGGCTTTCTGCATACCGGCAAACCCC
TGAGCTTCGTTTACGACATCGCCGATATCGTCAAATTCGAGACGGTGGTGCCGGCTGCGTTTCGCGTAGCGGCTCGTAAT
CCGCCGATGCCGGAGCGGGAAGTACGCGTTGCGTGTCGCGATGCTTTCAAGCAAGCCCGCTTATTGCAGCGGTTGATCCC
CATGATCGAGGACGTATTGGCCGCTGGAGAAATCGAGCCTCCACCTCCGCCGCCGGATGCGGTCCCACCGGCGATCCCGG
AGCCTGAATCCGTCGGCGATGCAGGGCATCGGAGTCAATGA

Upstream 100 bases:

>100_bases
TGACCCGAGGCGTCTGATCGAAACGCTCGCACACGGGGTCGGACGGGCCAAAGCGTTCGGCTGTGGATTGATGTTGTTAC
GTCGGCCATAGGAGATCGCC

Downstream 100 bases:

>100_bases
TATGGCAATGCTGGTGGTCGTTACCGAAGCCGTACCTCCCAGACTTAGAGGCCGTTTGGCTGTGTGGTTGCTGGAAATCC
GAGCGGGGGTTTACGTCGGC

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MGFIPLKPIPVKDRMSMIFVGMGQIDVRDGAFVVIDDVNGERMHIPVGSVACLLLEPGTRVSHAAVKLASVVGTLLIWVG
DAGVRLYSAGQPGGARSDKLLYQAQLARDEKLRLKVVRKMFELRFGEEPPSRRSVDQLRGMEGARVRKTYQLLAKQYGVK
WHGRRYDPTQWDASDVANQCLSAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDIADIVKFETVVPAAFRVAARN
PPMPEREVRVACRDAFKQARLLQRLIPMIEDVLAAGEIEPPPPPPDAVPPAIPEPESVGDAGHRSQ

Sequences:

>Translated_306_residues
MGFIPLKPIPVKDRMSMIFVGMGQIDVRDGAFVVIDDVNGERMHIPVGSVACLLLEPGTRVSHAAVKLASVVGTLLIWVG
DAGVRLYSAGQPGGARSDKLLYQAQLARDEKLRLKVVRKMFELRFGEEPPSRRSVDQLRGMEGARVRKTYQLLAKQYGVK
WHGRRYDPTQWDASDVANQCLSAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDIADIVKFETVVPAAFRVAARN
PPMPEREVRVACRDAFKQARLLQRLIPMIEDVLAAGEIEPPPPPPDAVPPAIPEPESVGDAGHRSQ
>Mature_305_residues
GFIPLKPIPVKDRMSMIFVGMGQIDVRDGAFVVIDDVNGERMHIPVGSVACLLLEPGTRVSHAAVKLASVVGTLLIWVGD
AGVRLYSAGQPGGARSDKLLYQAQLARDEKLRLKVVRKMFELRFGEEPPSRRSVDQLRGMEGARVRKTYQLLAKQYGVKW
HGRRYDPTQWDASDVANQCLSAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDIADIVKFETVVPAAFRVAARNP
PMPEREVRVACRDAFKQARLLQRLIPMIEDVLAAGEIEPPPPPPDAVPPAIPEPESVGDAGHRSQ

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=306, Percent_Identity=74.5098039215686, Blast_Score=474, Evalue=1e-135,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 33399; Mature: 33268

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFIPLKPIPVKDRMSMIFVGMGQIDVRDGAFVVIDDVNGERMHIPVGSVACLLLEPGTR
CCCCCCCCCCCHHCCEEEEEECCEEEECCCCEEEEECCCCCEEEEEHHHEEEEEECCCCC
VSHAAVKLASVVGTLLIWVGDAGVRLYSAGQPGGARSDKLLYQAQLARDEKLRLKVVRKM
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
FELRFGEEPPSRRSVDQLRGMEGARVRKTYQLLAKQYGVKWHGRRYDPTQWDASDVANQC
HHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
LSAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDIADIVKFETVVPAAFRVAARN
HHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPMPEREVRVACRDAFKQARLLQRLIPMIEDVLAAGEIEPPPPPPDAVPPAIPEPESVGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
AGHRSQ
CCCCCC
>Mature Secondary Structure 
GFIPLKPIPVKDRMSMIFVGMGQIDVRDGAFVVIDDVNGERMHIPVGSVACLLLEPGTR
CCCCCCCCCCHHCCEEEEEECCEEEECCCCEEEEECCCCCEEEEEHHHEEEEEECCCCC
VSHAAVKLASVVGTLLIWVGDAGVRLYSAGQPGGARSDKLLYQAQLARDEKLRLKVVRKM
HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
FELRFGEEPPSRRSVDQLRGMEGARVRKTYQLLAKQYGVKWHGRRYDPTQWDASDVANQC
HHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
LSAATACLYGITEAAILAAGYAPAIGFLHTGKPLSFVYDIADIVKFETVVPAAFRVAARN
HHHHHHHHHHHHHHHHHHHCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PPMPEREVRVACRDAFKQARLLQRLIPMIEDVLAAGEIEPPPPPPDAVPPAIPEPESVGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
AGHRSQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]