Click here to switch to the map view.

The map label for this gene is ycaO [H]

Identifier: 92112170

GI number: 92112170

Start: 41655

End: 43862

Strand: Direct

Name: ycaO [H]

Synonym: Csal_0034

Alternate gene names: 92112170

Gene position: 41655-43862 (Clockwise)

Preceding gene: 92112169

Following gene: 92112171

Centisome position: 1.13

GC content: 63.72

Gene sequence:

>2208_bases
ATGGAAATCAAGGTCAACTTTCTCGAAAACCTGCGGCTGGCGGCCAAGTTCGACGACTTCACCGTCGAGACCGACCAGCC
CATTCGCTACAAGGGCGACGGCTCGGCGCCGAGTCCGTTCGACTACTTCCTGGCCTCCTCGGCGTTGTGTGCGGCTTATT
TCGTGCGCTTGTACTGCAACGCGCGGGACATCCCTACCGAGAACATCCGGCTGTCGCAGAACAACATCGTCGACCCCGAG
AATCGCTACAACCAGATCTTCAAGATCCAGGTGGAGCTGCCGGAGGACCTTTCCGAAAAGGACCGCACCGGTATCCTGCG
CGCGGCGGAGCGCTGCAGCGTCAAGCGCGTGATCCAGAACGCGCCTGAGTTCCAGATCGAGACGGTCGAGAACATCGACG
AGGACGCCCAGGCGCTGTTGATGGGCACGAACGCCAAGGACGGCGACGCAGGCGGCGAAACCTGGATCGAGGGCAAGGAC
CTGCCGCTGGAGCGCACCATCGCCAACATGACCCGGATCCTCGAGGATCTGGGCATGAAGATCGAGATCGCCTCGTGGCG
CAATATCGTGCCCAACGTCTGGTCGCTGCATCTGCGCGACGCGGCCTCGCCGATGTGTTTCACCAACGGCAAGGGCGCGA
CCAAGGAAGCGGCGCTGTGCTCGGCGCTGGGCGAGTTCATCGAGCGCCTCTCCTGCAACTTCTTCTACAACGACCAGTTC
TTCGGCGAGGCGATCGCCGATAGTGCCTTCGTTCACTATCCCAGCGAGCGCTGGTTCCCGCTGGAAGATGATGACGCGCT
GCCCGCCGGGCTGCTCGACGCACATTGTCGGGCGATCTTCGATCCGGACGGCGAACTGCGCGGCTCGCACCTGATCGACA
CCAACTCCGGGCGAAAGGATCGCGGCATCGTCGCGCTGCCGTTCAAGCGCCGCTCCGATGGCGAGACGGTGTACTTCCCT
TCCAACCTGATCGAGAACCTCTACCTCAGCAACGGCATGAGCGCCGGCAACACGCTCGCCGAGGCCGAGGTGCAGTGCCT
TTCCGAGATCTTCGAGCGCGCGGTGAAGAAGGAAATCATCGAGCAAGAGATCGTCCTGCCGGACGTGCCGGAAGAGGTGC
TGGCCAAGTACCCCGGCATTCAGGAAGGCATCGCCGCACTGGAGGCCCAGGGCTTCCCGGTGCTGGTCAAGGACGCCTCG
CTCGGCGGCCGCTACCCGGTGATGTGCGTGACCCTGATGAACCCGCGCACCGGTGGGGTGTTCGCCTCCTTCGGTGCGCA
CCCGAGCTTCCAGGTCGCGCTGGAGCGCAGCCTCACCGAGCTGCTCCAGGGGCGCAGCTTCGAGGGCCTGAACGACCTGC
CGCAGCCGACCTTCAGCTCGCTGGCGGTCTCCGAGCCCAACAACTTCGTCGAGCACTTCATCGACTCCTCCGGGGTGATC
TCCTGGCGCTTCTTCAGCGACCGCACGGATCTCGACTTCCACGAATGGGACTTCGCCGGCACCACTGCGGAAGAAGCCGA
GCGCCTCTACGGACTGCTCGCCGATCAGGGCCTGGAAGCCTACGTGATGGAACACGAGGACCTGGGCGCGCCGGTGTGCC
GCATCCTGGTGCCGGGGTATTCCGAGGTATACCCGGTCGAGGACCTGGTGTGGGACAACACCAACATGGCGCTGGACTTC
CGGGCGGACATTCTCCATCTGCACACACTTGAGGATGAGCGCCTCGCCGACCTGCTCGAGCGCCTGGAAGAAAGCCAGCT
CGACGATCACATCAAGGTCGGCACGCTGATCGGCATCGAGTTCGACGACAACACCGTGTGGAGCGAGCTGACCATCCTCG
AGCTCAAGCTGCTGATCGAGCTCGCCCTGGGCGAGTACGAAGCCGCGCTGGAGCACGTTCAGATGTTCCTGCAGTTCAAC
GACAACACCGTGCAGCGCGGCCTGTTCCATCAGGCCATGCAGGCGGTGCTGGAGATCGCCCTGGACGATGACCTCGACTT
CAACGACTACCACCGCAACCTCACGCGTATGTTCGGCGAAGAGACCATGCGCCAGGTGATCGGCGCGGTGAATGACGAGA
TACGCTTCCCCGGGCTGACGCCCACCAGCATGGGACTGGAAGGCATCGACCGCCACCAGCGCCTGATCGAAAGCTACCGC
AAGCTGCACGCCGCACGCGCCGCCGGGGCCGGCATCGCCACCTCGTAA

Upstream 100 bases:

>100_bases
CGATCATCGCTTCCCCACCCAAGACACACCCGCTTGAAACCCGGATAATGGCGGGCAATTCGCCCCCTGGGCGCACCCGA
CACCAACCCGGTTCGTGTAC

Downstream 100 bases:

>100_bases
ACCGCCCCTCCCCACCCTCTCCGTCACCGCCACGCACGGCGCGCCCCGGCGGAGAGGGCATTATCCCCTCCATGCATTGA
CGCCAGAGCCTCGACATACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MEIKVNFLENLRLAAKFDDFTVETDQPIRYKGDGSAPSPFDYFLASSALCAAYFVRLYCNARDIPTENIRLSQNNIVDPE
NRYNQIFKIQVELPEDLSEKDRTGILRAAERCSVKRVIQNAPEFQIETVENIDEDAQALLMGTNAKDGDAGGETWIEGKD
LPLERTIANMTRILEDLGMKIEIASWRNIVPNVWSLHLRDAASPMCFTNGKGATKEAALCSALGEFIERLSCNFFYNDQF
FGEAIADSAFVHYPSERWFPLEDDDALPAGLLDAHCRAIFDPDGELRGSHLIDTNSGRKDRGIVALPFKRRSDGETVYFP
SNLIENLYLSNGMSAGNTLAEAEVQCLSEIFERAVKKEIIEQEIVLPDVPEEVLAKYPGIQEGIAALEAQGFPVLVKDAS
LGGRYPVMCVTLMNPRTGGVFASFGAHPSFQVALERSLTELLQGRSFEGLNDLPQPTFSSLAVSEPNNFVEHFIDSSGVI
SWRFFSDRTDLDFHEWDFAGTTAEEAERLYGLLADQGLEAYVMEHEDLGAPVCRILVPGYSEVYPVEDLVWDNTNMALDF
RADILHLHTLEDERLADLLERLEESQLDDHIKVGTLIGIEFDDNTVWSELTILELKLLIELALGEYEAALEHVQMFLQFN
DNTVQRGLFHQAMQAVLEIALDDDLDFNDYHRNLTRMFGEETMRQVIGAVNDEIRFPGLTPTSMGLEGIDRHQRLIESYR
KLHAARAAGAGIATS

Sequences:

>Translated_735_residues
MEIKVNFLENLRLAAKFDDFTVETDQPIRYKGDGSAPSPFDYFLASSALCAAYFVRLYCNARDIPTENIRLSQNNIVDPE
NRYNQIFKIQVELPEDLSEKDRTGILRAAERCSVKRVIQNAPEFQIETVENIDEDAQALLMGTNAKDGDAGGETWIEGKD
LPLERTIANMTRILEDLGMKIEIASWRNIVPNVWSLHLRDAASPMCFTNGKGATKEAALCSALGEFIERLSCNFFYNDQF
FGEAIADSAFVHYPSERWFPLEDDDALPAGLLDAHCRAIFDPDGELRGSHLIDTNSGRKDRGIVALPFKRRSDGETVYFP
SNLIENLYLSNGMSAGNTLAEAEVQCLSEIFERAVKKEIIEQEIVLPDVPEEVLAKYPGIQEGIAALEAQGFPVLVKDAS
LGGRYPVMCVTLMNPRTGGVFASFGAHPSFQVALERSLTELLQGRSFEGLNDLPQPTFSSLAVSEPNNFVEHFIDSSGVI
SWRFFSDRTDLDFHEWDFAGTTAEEAERLYGLLADQGLEAYVMEHEDLGAPVCRILVPGYSEVYPVEDLVWDNTNMALDF
RADILHLHTLEDERLADLLERLEESQLDDHIKVGTLIGIEFDDNTVWSELTILELKLLIELALGEYEAALEHVQMFLQFN
DNTVQRGLFHQAMQAVLEIALDDDLDFNDYHRNLTRMFGEETMRQVIGAVNDEIRFPGLTPTSMGLEGIDRHQRLIESYR
KLHAARAAGAGIATS
>Mature_735_residues
MEIKVNFLENLRLAAKFDDFTVETDQPIRYKGDGSAPSPFDYFLASSALCAAYFVRLYCNARDIPTENIRLSQNNIVDPE
NRYNQIFKIQVELPEDLSEKDRTGILRAAERCSVKRVIQNAPEFQIETVENIDEDAQALLMGTNAKDGDAGGETWIEGKD
LPLERTIANMTRILEDLGMKIEIASWRNIVPNVWSLHLRDAASPMCFTNGKGATKEAALCSALGEFIERLSCNFFYNDQF
FGEAIADSAFVHYPSERWFPLEDDDALPAGLLDAHCRAIFDPDGELRGSHLIDTNSGRKDRGIVALPFKRRSDGETVYFP
SNLIENLYLSNGMSAGNTLAEAEVQCLSEIFERAVKKEIIEQEIVLPDVPEEVLAKYPGIQEGIAALEAQGFPVLVKDAS
LGGRYPVMCVTLMNPRTGGVFASFGAHPSFQVALERSLTELLQGRSFEGLNDLPQPTFSSLAVSEPNNFVEHFIDSSGVI
SWRFFSDRTDLDFHEWDFAGTTAEEAERLYGLLADQGLEAYVMEHEDLGAPVCRILVPGYSEVYPVEDLVWDNTNMALDF
RADILHLHTLEDERLADLLERLEESQLDDHIKVGTLIGIEFDDNTVWSELTILELKLLIELALGEYEAALEHVQMFLQFN
DNTVQRGLFHQAMQAVLEIALDDDLDFNDYHRNLTRMFGEETMRQVIGAVNDEIRFPGLTPTSMGLEGIDRHQRLIESYR
KLHAARAAGAGIATS

Specific function: Unknown

COG id: COG1944

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0142 family [H]

Homologues:

Organism=Escherichia coli, GI87081799, Length=580, Percent_Identity=48.448275862069, Blast_Score=549, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003776 [H]

Pfam domain/function: PF02624 YcaO [H]

EC number: NA

Molecular weight: Translated: 82424; Mature: 82424

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKVNFLENLRLAAKFDDFTVETDQPIRYKGDGSAPSPFDYFLASSALCAAYFVRLYCN
CEEEEEHHHCCEEEEECCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
ARDIPTENIRLSQNNIVDPENRYNQIFKIQVELPEDLSEKDRTGILRAAERCSVKRVIQN
CCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
APEFQIETVENIDEDAQALLMGTNAKDGDAGGETWIEGKDLPLERTIANMTRILEDLGMK
CCCEEEEHHHCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCE
IEIASWRNIVPNVWSLHLRDAASPMCFTNGKGATKEAALCSALGEFIERLSCNFFYNDQF
EEECCHHCCCCHHHEEHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCHH
FGEAIADSAFVHYPSERWFPLEDDDALPAGLLDAHCRAIFDPDGELRGSHLIDTNSGRKD
HHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCCCCCEEEECCCCCCC
RGIVALPFKRRSDGETVYFPSNLIENLYLSNGMSAGNTLAEAEVQCLSEIFERAVKKEII
CCEEEECCCCCCCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EQEIVLPDVPEEVLAKYPGIQEGIAALEAQGFPVLVKDASLGGRYPVMCVTLMNPRTGGV
HHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCE
FASFGAHPSFQVALERSLTELLQGRSFEGLNDLPQPTFSSLAVSEPNNFVEHFIDSSGVI
EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEECCCHHHHHHHCCCCCEE
SWRFFSDRTDLDFHEWDFAGTTAEEAERLYGLLADQGLEAYVMEHEDLGAPVCRILVPGY
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEHEECCCC
SEVYPVEDLVWDNTNMALDFRADILHLHTLEDERLADLLERLEESQLDDHIKVGTLIGIE
CCCCCCHHHEECCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
FDDNTVWSELTILELKLLIELALGEYEAALEHVQMFLQFNDNTVQRGLFHQAMQAVLEIA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LDDDLDFNDYHRNLTRMFGEETMRQVIGAVNDEIRFPGLTPTSMGLEGIDRHQRLIESYR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH
KLHAARAAGAGIATS
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MEIKVNFLENLRLAAKFDDFTVETDQPIRYKGDGSAPSPFDYFLASSALCAAYFVRLYCN
CEEEEEHHHCCEEEEECCCEEECCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
ARDIPTENIRLSQNNIVDPENRYNQIFKIQVELPEDLSEKDRTGILRAAERCSVKRVIQN
CCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
APEFQIETVENIDEDAQALLMGTNAKDGDAGGETWIEGKDLPLERTIANMTRILEDLGMK
CCCEEEEHHHCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCE
IEIASWRNIVPNVWSLHLRDAASPMCFTNGKGATKEAALCSALGEFIERLSCNFFYNDQF
EEECCHHCCCCHHHEEHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCHH
FGEAIADSAFVHYPSERWFPLEDDDALPAGLLDAHCRAIFDPDGELRGSHLIDTNSGRKD
HHHHHHCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHEEECCCCCCCCCEEEECCCCCCC
RGIVALPFKRRSDGETVYFPSNLIENLYLSNGMSAGNTLAEAEVQCLSEIFERAVKKEII
CCEEEECCCCCCCCCEEEECHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EQEIVLPDVPEEVLAKYPGIQEGIAALEAQGFPVLVKDASLGGRYPVMCVTLMNPRTGGV
HHHCCCCCCCHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCCCCE
FASFGAHPSFQVALERSLTELLQGRSFEGLNDLPQPTFSSLAVSEPNNFVEHFIDSSGVI
EEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEEECCCHHHHHHHCCCCCEE
SWRFFSDRTDLDFHEWDFAGTTAEEAERLYGLLADQGLEAYVMEHEDLGAPVCRILVPGY
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEHEECCCC
SEVYPVEDLVWDNTNMALDFRADILHLHTLEDERLADLLERLEESQLDDHIKVGTLIGIE
CCCCCCHHHEECCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEE
FDDNTVWSELTILELKLLIELALGEYEAALEHVQMFLQFNDNTVQRGLFHQAMQAVLEIA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LDDDLDFNDYHRNLTRMFGEETMRQVIGAVNDEIRFPGLTPTSMGLEGIDRHQRLIESYR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHH
KLHAARAAGAGIATS
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]