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The map label for this gene is rfaF [H]

Identifier: 92112145

GI number: 92112145

Start: 11501

End: 12550

Strand: Direct

Name: rfaF [H]

Synonym: Csal_0009

Alternate gene names: 92112145

Gene position: 11501-12550 (Clockwise)

Preceding gene: 92112144

Following gene: 92112149

Centisome position: 0.31

GC content: 68.48

Gene sequence:

>1050_bases
ATGGCTGACGATACCGCCACCTCCCCGCGCCTGCTCGTCGTCGGCCCCTCGTGGGTCGGCGACATGGTCATGGCCCAGAG
TCTGTTCATGACGCTCAAGGCGCATCACCCCGAGGCCTATATCGGGGTGATGGCGCCGGGCTGGTCGCTGCCGATCCTGG
CGCGCATGCCCGAGGTCGACGAGACCATCGCGCTGGACGTCAAGCACGGCGAGTTTGGCTGGGCCACGCGCCGTGCGGTG
GCGGGCAAGCTGAAGGGGCGCTTCGATCGGGCGATCGTGCTGCCGCGGTCCTGGAAATCGGCCCTGGTACCTTTCCTGGC
GCGGATACCCGAGCGCGTGGGCTTCCATGGCGAGCAGCGCTATTGGCTTCTCAACGCCCGCCGTCAGCTCGACAAGCGCG
TACTGGATCAAACGGTGAAGCGCTTCGTGTCGCTGGGGTTGCCCGAGGAGCAGGCCCTTACGGGAGACTTCGCCATTCCC
GCGCCTCGGCTCGACGTGAACGGCGACGAACAGCAGCGCTTGCGCGACTCCCTGGGGCTTTCGTCAGGGCCCGCGATCGG
CATGATGCCGGGGGCCGAGTTTGGCCCGGCCAAGCAATGGCCGTTGGCGCATTTTCGCACCCTGGCGGAGCGTCTGGTGG
CCGAGGGGTACGAGGTGCGGGTGATGGGCGGCCCCAAGGACGCCGACGCCGGCGAGACGATCAGCCAGGCGTTGCCCGGG
GTCCACAATCTCTGTGGTCGCACGCAGCTGACCGAGGTCGTCGACCTGCTCGCCGACTGCCAGCAGGTGGTCACCAACGA
TTCCGGGCTGATGCACGTGGCGGCGGCCGTGGGCACCAGGGTTCAGGCCGTCTACGGATCGTCCTCGCCGAGTTATACGC
CGCCGCTGACCGAGAACGCCGAGATCCACGACCTCTACCTGTCCTGCTCGCCGTGCTTCGCCCGCGAATGCCCCCTGGGG
CACACCAACTGTCTGCGCCACCTCGAGCCGGCGCGACTGCTGGCCTCGATCCGCGCCGCCGGGTCCGCGTCACCGCGCTC
GCTCAGTTGA

Upstream 100 bases:

>100_bases
AGCTATACCCGGGCGGATATCTCGCGGCTGCGCGAGGCGGGGTACAAGGCGGAATTCAAGACGGTTCGCGAAGGCGTCAG
CGCCTACCTGGATTGGCTGA

Downstream 100 bases:

>100_bases
CGCCCTTCCACATGTAAGACTGCAGGGCGTCTTCCTCTTGCATGTGGTCGTTGATGGTTTCGAGCCCGTATTCTTCGATC
AGCGTGGGGCGTTCGGCGAA

Product: lipopolysaccharide heptosyltransferase II

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MADDTATSPRLLVVGPSWVGDMVMAQSLFMTLKAHHPEAYIGVMAPGWSLPILARMPEVDETIALDVKHGEFGWATRRAV
AGKLKGRFDRAIVLPRSWKSALVPFLARIPERVGFHGEQRYWLLNARRQLDKRVLDQTVKRFVSLGLPEEQALTGDFAIP
APRLDVNGDEQQRLRDSLGLSSGPAIGMMPGAEFGPAKQWPLAHFRTLAERLVAEGYEVRVMGGPKDADAGETISQALPG
VHNLCGRTQLTEVVDLLADCQQVVTNDSGLMHVAAAVGTRVQAVYGSSSPSYTPPLTENAEIHDLYLSCSPCFARECPLG
HTNCLRHLEPARLLASIRAAGSASPRSLS

Sequences:

>Translated_349_residues
MADDTATSPRLLVVGPSWVGDMVMAQSLFMTLKAHHPEAYIGVMAPGWSLPILARMPEVDETIALDVKHGEFGWATRRAV
AGKLKGRFDRAIVLPRSWKSALVPFLARIPERVGFHGEQRYWLLNARRQLDKRVLDQTVKRFVSLGLPEEQALTGDFAIP
APRLDVNGDEQQRLRDSLGLSSGPAIGMMPGAEFGPAKQWPLAHFRTLAERLVAEGYEVRVMGGPKDADAGETISQALPG
VHNLCGRTQLTEVVDLLADCQQVVTNDSGLMHVAAAVGTRVQAVYGSSSPSYTPPLTENAEIHDLYLSCSPCFARECPLG
HTNCLRHLEPARLLASIRAAGSASPRSLS
>Mature_348_residues
ADDTATSPRLLVVGPSWVGDMVMAQSLFMTLKAHHPEAYIGVMAPGWSLPILARMPEVDETIALDVKHGEFGWATRRAVA
GKLKGRFDRAIVLPRSWKSALVPFLARIPERVGFHGEQRYWLLNARRQLDKRVLDQTVKRFVSLGLPEEQALTGDFAIPA
PRLDVNGDEQQRLRDSLGLSSGPAIGMMPGAEFGPAKQWPLAHFRTLAERLVAEGYEVRVMGGPKDADAGETISQALPGV
HNLCGRTQLTEVVDLLADCQQVVTNDSGLMHVAAAVGTRVQAVYGSSSPSYTPPLTENAEIHDLYLSCSPCFARECPLGH
TNCLRHLEPARLLASIRAAGSASPRSLS

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=340, Percent_Identity=45.2941176470588, Blast_Score=272, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 37944; Mature: 37813

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADDTATSPRLLVVGPSWVGDMVMAQSLFMTLKAHHPEAYIGVMAPGWSLPILARMPEVD
CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCC
ETIALDVKHGEFGWATRRAVAGKLKGRFDRAIVLPRSWKSALVPFLARIPERVGFHGEQR
CEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCE
YWLLNARRQLDKRVLDQTVKRFVSLGLPEEQALTGDFAIPAPRLDVNGDEQQRLRDSLGL
EEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC
SSGPAIGMMPGAEFGPAKQWPLAHFRTLAERLVAEGYEVRVMGGPKDADAGETISQALPG
CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCH
VHNLCGRTQLTEVVDLLADCQQVVTNDSGLMHVAAAVGTRVQAVYGSSSPSYTPPLTENA
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
EIHDLYLSCSPCFARECPLGHTNCLRHLEPARLLASIRAAGSASPRSLS
CEEEEEEECCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
ADDTATSPRLLVVGPSWVGDMVMAQSLFMTLKAHHPEAYIGVMAPGWSLPILARMPEVD
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCC
ETIALDVKHGEFGWATRRAVAGKLKGRFDRAIVLPRSWKSALVPFLARIPERVGFHGEQR
CEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCE
YWLLNARRQLDKRVLDQTVKRFVSLGLPEEQALTGDFAIPAPRLDVNGDEQQRLRDSLGL
EEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCC
SSGPAIGMMPGAEFGPAKQWPLAHFRTLAERLVAEGYEVRVMGGPKDADAGETISQALPG
CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCH
VHNLCGRTQLTEVVDLLADCQQVVTNDSGLMHVAAAVGTRVQAVYGSSSPSYTPPLTENA
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC
EIHDLYLSCSPCFARECPLGHTNCLRHLEPARLLASIRAAGSASPRSLS
CEEEEEEECCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2198271; 8478319 [H]