| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is pgk [H]
Identifier: 91790464
GI number: 91790464
Start: 4916420
End: 4917751
Strand: Reverse
Name: pgk [H]
Synonym: Bpro_4635
Alternate gene names: 91790464
Gene position: 4917751-4916420 (Counterclockwise)
Preceding gene: 91790465
Following gene: 91790463
Centisome position: 94.57
GC content: 65.99
Gene sequence:
>1332_bases TTGCCAGACCGCAGGCGCCGCCCCCTGAGGGGGGAACAGGCTACACGAAGTGAGACTGGACGGGGGTGGGCCTATACACC GACCTACAATTTAAGGCTTCGGCCGTGTTGGCCAGCTTATTTCACTTGCGAGCGATCCATGAATTTCATCCGTTTTTCCG ACCTGTGTGCCAGCGGCAAGGCCGCCGGCCAGCGCGTTTTCATCCGTGCCGACCTGAACGTGCCGCAGGATGACAGCGGC GCCATCACCGAAGACACGCGCATACGTGCCTCCATTCCCTGCCTGCAAATGGCGCTGGACGCGGGTGCGGCCGTGATGGT GACCTCCCACCTCGGGCGTCCGGTGGAGGGCGAATTCAAGCCGGCCGACTCGCTGGCCCCGGTGGCCAAACGCCTGGGCG AGCTGATGAAGCGCGAGATTCCGCTGGTCACCCAGTGGGTGGACGGCGTGGACGTCCAGCCCGGGCAGCTGGTGTTGCTG GAGAACTGCCGCCTCAACCCCGGCGAGAAGAAAAACAGCGAAGCGCTGGCCCGCAAGATGGCCGCCCTGTGCGACATCTT TGTGCACGACGCGTTTGGCACCGCCCACCGCGCCGAGGCCTCGACCTATGGCATTGCGCAATACGCCAAGGTAGCGAGCG CCGGGCCGCTGCTGGCCGCCGAGATGGACGCGATTTCGACGGCGCTGTCCAACCCGCGCAGGCCGCTGGTCGCGATCGTC GCGGGCAGCAAGGTCTCGACCAAGCTGACCATCCTCAAGTCCCTGGCCAGCAATGTGGACCAGCTGATCGTGGGCGGCGG CATCGCCAACACCTTCATGCTGGCGGCCGGCCTGAAGATTGGCAAAAGCCTGGCGGAGGCCGACCTGCTGCCCGAGGCCC GTGCCGTGATCGAGGCCATGAAGGCACGCGGCGCTGCGGTGCCCATCCCCACCGACGTGGTCACGGCCAAGACCTTCGCG GCCGATGCCACGGCCACCGTCAAGGCCGCCACCGACGTGGAAGACGACGACCTGATCCTGGACATCGGCCCCGAGACCAC GGCCCGGTTGGCGGCGCAGCTCAAGGCGGCTGGCACCATTGTCTGGAATGGCCCGGTGGGCGTGTTCGAGTTTGATGCTT TTTCGCGCGGTACCGAAGGCATTGCCCGGGCGATCGCCGACAGCAGCGCCTTTTCGATTGCCGGTGGTGGCGACACGCTG GCTGCCATCGCCAAATACGGCATCGAGAAACAGGTGGGCTACATCTCCACGGGGGGCGGCGCATTCCTGGAGGTGCTGGA AGGCAAGACGCTGCCAGCCTTCGAAATCCTGCAGAAGCGGGCCGCCGGCTAG
Upstream 100 bases:
>100_bases CCGGCCCGGCAAAGCCGGTTCCGGGGCTCATGCTTGGTTGAAGAGTCCCTAACTTCAGCCGTCGCCCGATTTCACGCCAG CAGGGGCCGCGGGACTGGCT
Downstream 100 bases:
>100_bases AGTCTTTGCGCTCCTGATTTGGTAGCGATAAGCCAAGGTTTAATGGGCGCCATCGATCTTTTCTTCCCAAAAAAGGGTGC TTCGGCACCCTTTTTTCTGC
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 443; Mature: 442
Protein sequence:
>443_residues MPDRRRRPLRGEQATRSETGRGWAYTPTYNLRLRPCWPAYFTCERSMNFIRFSDLCASGKAAGQRVFIRADLNVPQDDSG AITEDTRIRASIPCLQMALDAGAAVMVTSHLGRPVEGEFKPADSLAPVAKRLGELMKREIPLVTQWVDGVDVQPGQLVLL ENCRLNPGEKKNSEALARKMAALCDIFVHDAFGTAHRAEASTYGIAQYAKVASAGPLLAAEMDAISTALSNPRRPLVAIV AGSKVSTKLTILKSLASNVDQLIVGGGIANTFMLAAGLKIGKSLAEADLLPEARAVIEAMKARGAAVPIPTDVVTAKTFA ADATATVKAATDVEDDDLILDIGPETTARLAAQLKAAGTIVWNGPVGVFEFDAFSRGTEGIARAIADSSAFSIAGGGDTL AAIAKYGIEKQVGYISTGGGAFLEVLEGKTLPAFEILQKRAAG
Sequences:
>Translated_443_residues MPDRRRRPLRGEQATRSETGRGWAYTPTYNLRLRPCWPAYFTCERSMNFIRFSDLCASGKAAGQRVFIRADLNVPQDDSG AITEDTRIRASIPCLQMALDAGAAVMVTSHLGRPVEGEFKPADSLAPVAKRLGELMKREIPLVTQWVDGVDVQPGQLVLL ENCRLNPGEKKNSEALARKMAALCDIFVHDAFGTAHRAEASTYGIAQYAKVASAGPLLAAEMDAISTALSNPRRPLVAIV AGSKVSTKLTILKSLASNVDQLIVGGGIANTFMLAAGLKIGKSLAEADLLPEARAVIEAMKARGAAVPIPTDVVTAKTFA ADATATVKAATDVEDDDLILDIGPETTARLAAQLKAAGTIVWNGPVGVFEFDAFSRGTEGIARAIADSSAFSIAGGGDTL AAIAKYGIEKQVGYISTGGGAFLEVLEGKTLPAFEILQKRAAG >Mature_442_residues PDRRRRPLRGEQATRSETGRGWAYTPTYNLRLRPCWPAYFTCERSMNFIRFSDLCASGKAAGQRVFIRADLNVPQDDSGA ITEDTRIRASIPCLQMALDAGAAVMVTSHLGRPVEGEFKPADSLAPVAKRLGELMKREIPLVTQWVDGVDVQPGQLVLLE NCRLNPGEKKNSEALARKMAALCDIFVHDAFGTAHRAEASTYGIAQYAKVASAGPLLAAEMDAISTALSNPRRPLVAIVA GSKVSTKLTILKSLASNVDQLIVGGGIANTFMLAAGLKIGKSLAEADLLPEARAVIEAMKARGAAVPIPTDVVTAKTFAA DATATVKAATDVEDDDLILDIGPETTARLAAQLKAAGTIVWNGPVGVFEFDAFSRGTEGIARAIADSSAFSIAGGGDTLA AIAKYGIEKQVGYISTGGGAFLEVLEGKTLPAFEILQKRAAG
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI31543397, Length=405, Percent_Identity=38.0246913580247, Blast_Score=247, Evalue=2e-65, Organism=Homo sapiens, GI4505763, Length=403, Percent_Identity=35.7320099255583, Blast_Score=238, Evalue=7e-63, Organism=Escherichia coli, GI1789294, Length=395, Percent_Identity=58.7341772151899, Blast_Score=446, Evalue=1e-126, Organism=Caenorhabditis elegans, GI17508823, Length=404, Percent_Identity=42.8217821782178, Blast_Score=286, Evalue=1e-77, Organism=Saccharomyces cerevisiae, GI6319857, Length=407, Percent_Identity=38.5749385749386, Blast_Score=244, Evalue=2e-65, Organism=Drosophila melanogaster, GI17136394, Length=401, Percent_Identity=38.1546134663342, Blast_Score=230, Evalue=1e-60, Organism=Drosophila melanogaster, GI24581203, Length=399, Percent_Identity=36.8421052631579, Blast_Score=222, Evalue=3e-58,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 46785; Mature: 46654
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDRRRRPLRGEQATRSETGRGWAYTPTYNLRLRPCWPAYFTCERSMNFIRFSDLCASGK CCCCCCCCCCCCCHHHCCCCCCEEECCEECEEEEECCCHHHHHCCCCCEEEHHHHHCCCC AAGQRVFIRADLNVPQDDSGAITEDTRIRASIPCLQMALDAGAAVMVTSHLGRPVEGEFK CCCCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCEEEEEHHCCCCCCCCCC PADSLAPVAKRLGELMKREIPLVTQWVDGVDVQPGQLVLLENCRLNPGEKKNSEALARKM CCCHHHHHHHHHHHHHHHCCCEEEHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH AALCDIFVHDAFGTAHRAEASTYGIAQYAKVASAGPLLAAEMDAISTALSNPRRPLVAIV HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEE AGSKVSTKLTILKSLASNVDQLIVGGGIANTFMLAAGLKIGKSLAEADLLPEARAVIEAM ECCCCHHHHHHHHHHHHCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KARGAAVPIPTDVVTAKTFAADATATVKAATDVEDDDLILDIGPETTARLAAQLKAAGTI HHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHCCEE VWNGPVGVFEFDAFSRGTEGIARAIADSSAFSIAGGGDTLAAIAKYGIEKQVGYISTGGG EECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCHHCCCEEECCCH AFLEVLEGKTLPAFEILQKRAAG HHHHHHCCCCCCHHHHHHHHCCC >Mature Secondary Structure PDRRRRPLRGEQATRSETGRGWAYTPTYNLRLRPCWPAYFTCERSMNFIRFSDLCASGK CCCCCCCCCCCCHHHCCCCCCEEECCEECEEEEECCCHHHHHCCCCCEEEHHHHHCCCC AAGQRVFIRADLNVPQDDSGAITEDTRIRASIPCLQMALDAGAAVMVTSHLGRPVEGEFK CCCCEEEEEEECCCCCCCCCCCCCCCEEEECCHHHHHHHCCCCEEEEEHHCCCCCCCCCC PADSLAPVAKRLGELMKREIPLVTQWVDGVDVQPGQLVLLENCRLNPGEKKNSEALARKM CCCHHHHHHHHHHHHHHHCCCEEEHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH AALCDIFVHDAFGTAHRAEASTYGIAQYAKVASAGPLLAAEMDAISTALSNPRRPLVAIV HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEE AGSKVSTKLTILKSLASNVDQLIVGGGIANTFMLAAGLKIGKSLAEADLLPEARAVIEAM ECCCCHHHHHHHHHHHHCHHHEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH KARGAAVPIPTDVVTAKTFAADATATVKAATDVEDDDLILDIGPETTARLAAQLKAAGTI HHCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHCCEE VWNGPVGVFEFDAFSRGTEGIARAIADSSAFSIAGGGDTLAAIAKYGIEKQVGYISTGGG EECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCHHCCCEEECCCH AFLEVLEGKTLPAFEILQKRAAG HHHHHHCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA