| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is purR [H]
Identifier: 91790402
GI number: 91790402
Start: 4843131
End: 4844183
Strand: Reverse
Name: purR [H]
Synonym: Bpro_4573
Alternate gene names: 91790402
Gene position: 4844183-4843131 (Counterclockwise)
Preceding gene: 91790403
Following gene: 91790401
Centisome position: 93.15
GC content: 66.67
Gene sequence:
>1053_bases GTGAGCAAGATTCAGGATGTGGCCAGCCGTGCTGGCGTGTCAACCAGCACGGTGTCCAACGTGCTCAATGGCCGGAGCAA CCGCATGGCCAAAGAGACGCTGGCGCGTGTGGAGGCGGCGATTGCCGAGCTCCGGTACCGGCCCAACACCACGGCGCGCC AGCTCAAGACCGGCCACACGCCCATGCTGGGTTTGCTGGTGCCGTCAATCGCCAACCCCATGTACGGCTTCATTGCCCGT GAGATCGAAACCCAGGCACAGGAGCGCTACGGCTTTCGCATCATGATGGGCAACACCTATCGCGACAAGGACAAGGAAGC CCGCTTCTTCGACGACCTGATGGCGCATGGCGTGCGCGGCGTGATCATCATCTCCTCGCTCGTCGACGAGCAGCACTTCG AATCCGCCGGCGAGCGCGGCCTGGTGGTGGTCAGTTATGACCGCCGCGCCACGCCTGGCGTCGAGTCGGGCATTGACCAC GTGTCGGTCGACAACTTCGAGGCGGCCCGCATCGCCACCGAGCACCTGATAGCGCAGGGCCACAGGCGGCTGGCCTTTGT GACGGCCGCCGGCATCACCATGAGCCGGCGTGAAAAGATCAACGGTTTCATGGCGGCCGCGGCCAGCGCCGGCCTGGTTG CCAGCGCGCAGGTGATCGAGGGCACGCCGCTCAATGAATACGGCGACTCGATGATGAGCGAGCTGGGCCGCATCGAGGCG GCAAAGCTCGCCGGACGCGACCCGGCGGAGCGGCCCACCGGCGTTGTGGCGGTCAACGACATGATGGCGCTGGGCCTGAT GGCCGGTTTTCGCGAGGCCGGGCTGTCCGTGCCGGCCGACGTGTCGGTGGTGGGCATGGACGATGTGTTTTTGTCGGCGC TGATGCATCCGGCCCTGACCACGGTGCGCCTGCCCGTGCCGGAGATGGCCCACACCATCGTCGAGCGCGTGATGAGCCGG CTGGCCGCCCCCAGCCTGCCGACCGGCGAGTTCATCTTCCAGCCCAGCCTGGTGGTCAGGGGCTCCGTGGCAGCCCGAAG CTCCGAACAGTGA
Upstream 100 bases:
>100_bases GTATCTTGTGGTCTTGTTTGTGACGCTGATGGTGCTGGTTCTGGTGCCGGCGTTTTCCCTGTGGCTGCCCACCCGCATGG GCTTATAGGAAAGAAACCGC
Downstream 100 bases:
>100_bases AGTCCTTTTGAGCATTGAATTTTTTGTGAACTTTTGACGATTGAACAATTGAACAAGGCATGGAATGACAACGGTTTTTG TAAGCCACCCCCGAACCAGC
Product: LacI family transcription regulator
Products: NA
Alternate protein names: Pur regulon repressor; Purine nucleotide synthesis repressor [H]
Number of amino acids: Translated: 350; Mature: 349
Protein sequence:
>350_residues MSKIQDVASRAGVSTSTVSNVLNGRSNRMAKETLARVEAAIAELRYRPNTTARQLKTGHTPMLGLLVPSIANPMYGFIAR EIETQAQERYGFRIMMGNTYRDKDKEARFFDDLMAHGVRGVIIISSLVDEQHFESAGERGLVVVSYDRRATPGVESGIDH VSVDNFEAARIATEHLIAQGHRRLAFVTAAGITMSRREKINGFMAAAASAGLVASAQVIEGTPLNEYGDSMMSELGRIEA AKLAGRDPAERPTGVVAVNDMMALGLMAGFREAGLSVPADVSVVGMDDVFLSALMHPALTTVRLPVPEMAHTIVERVMSR LAAPSLPTGEFIFQPSLVVRGSVAARSSEQ
Sequences:
>Translated_350_residues MSKIQDVASRAGVSTSTVSNVLNGRSNRMAKETLARVEAAIAELRYRPNTTARQLKTGHTPMLGLLVPSIANPMYGFIAR EIETQAQERYGFRIMMGNTYRDKDKEARFFDDLMAHGVRGVIIISSLVDEQHFESAGERGLVVVSYDRRATPGVESGIDH VSVDNFEAARIATEHLIAQGHRRLAFVTAAGITMSRREKINGFMAAAASAGLVASAQVIEGTPLNEYGDSMMSELGRIEA AKLAGRDPAERPTGVVAVNDMMALGLMAGFREAGLSVPADVSVVGMDDVFLSALMHPALTTVRLPVPEMAHTIVERVMSR LAAPSLPTGEFIFQPSLVVRGSVAARSSEQ >Mature_349_residues SKIQDVASRAGVSTSTVSNVLNGRSNRMAKETLARVEAAIAELRYRPNTTARQLKTGHTPMLGLLVPSIANPMYGFIARE IETQAQERYGFRIMMGNTYRDKDKEARFFDDLMAHGVRGVIIISSLVDEQHFESAGERGLVVVSYDRRATPGVESGIDHV SVDNFEAARIATEHLIAQGHRRLAFVTAAGITMSRREKINGFMAAAASAGLVASAQVIEGTPLNEYGDSMMSELGRIEAA KLAGRDPAERPTGVVAVNDMMALGLMAGFREAGLSVPADVSVVGMDDVFLSALMHPALTTVRLPVPEMAHTIVERVMSRL AAPSLPTGEFIFQPSLVVRGSVAARSSEQ
Specific function: Is the main repressor of the genes involved in the de novo synthesis of purine nucleotides, regulating purB, purC, purEK, purF, purHD, purL, purMN and guaBA expression. PurR is allosterically activated to bind its cognate DNA by binding the purine corepre
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789202, Length=353, Percent_Identity=31.4447592067989, Blast_Score=161, Evalue=6e-41, Organism=Escherichia coli, GI1790194, Length=345, Percent_Identity=32.463768115942, Blast_Score=156, Evalue=2e-39, Organism=Escherichia coli, GI1788474, Length=352, Percent_Identity=30.6818181818182, Blast_Score=152, Evalue=4e-38, Organism=Escherichia coli, GI1787948, Length=348, Percent_Identity=29.3103448275862, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1790369, Length=345, Percent_Identity=27.2463768115942, Blast_Score=131, Evalue=6e-32, Organism=Escherichia coli, GI1787906, Length=330, Percent_Identity=29.3939393939394, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789068, Length=354, Percent_Identity=29.9435028248588, Blast_Score=115, Evalue=6e-27, Organism=Escherichia coli, GI48994940, Length=325, Percent_Identity=26.7692307692308, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1786540, Length=347, Percent_Identity=29.1066282420749, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787580, Length=330, Percent_Identity=25.4545454545455, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1786268, Length=149, Percent_Identity=32.2147651006711, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1790715, Length=333, Percent_Identity=24.6246246246246, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1789456, Length=366, Percent_Identity=26.2295081967213, Blast_Score=70, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000843 - InterPro: IPR010982 - InterPro: IPR001761 [H]
Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]
EC number: NA
Molecular weight: Translated: 37700; Mature: 37569
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIQDVASRAGVSTSTVSNVLNGRSNRMAKETLARVEAAIAELRYRPNTTARQLKTGHT CCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC PMLGLLVPSIANPMYGFIAREIETQAQERYGFRIMMGNTYRDKDKEARFFDDLMAHGVRG CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCH VIIISSLVDEQHFESAGERGLVVVSYDRRATPGVESGIDHVSVDNFEAARIATEHLIAQG HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCC HRRLAFVTAAGITMSRREKINGFMAAAASAGLVASAQVIEGTPLNEYGDSMMSELGRIEA CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCCHHHHHHHHHHHHHHHH AKLAGRDPAERPTGVVAVNDMMALGLMAGFREAGLSVPADVSVVGMDDVFLSALMHPALT HHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHH TVRLPVPEMAHTIVERVMSRLAAPSLPTGEFIFQPSLVVRGSVAARSSEQ EEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCC >Mature Secondary Structure SKIQDVASRAGVSTSTVSNVLNGRSNRMAKETLARVEAAIAELRYRPNTTARQLKTGHT CHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC PMLGLLVPSIANPMYGFIAREIETQAQERYGFRIMMGNTYRDKDKEARFFDDLMAHGVRG CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCH VIIISSLVDEQHFESAGERGLVVVSYDRRATPGVESGIDHVSVDNFEAARIATEHLIAQG HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCC HRRLAFVTAAGITMSRREKINGFMAAAASAGLVASAQVIEGTPLNEYGDSMMSELGRIEA CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHEEHHHHCCCCCHHHHHHHHHHHHHHHH AKLAGRDPAERPTGVVAVNDMMALGLMAGFREAGLSVPADVSVVGMDDVFLSALMHPALT HHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHH TVRLPVPEMAHTIVERVMSRLAAPSLPTGEFIFQPSLVVRGSVAARSSEQ EEECCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA