Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 91789967

GI number: 91789967

Start: 4333957

End: 4334682

Strand: Reverse

Name: ycdC [C]

Synonym: Bpro_4128

Alternate gene names: 91789967

Gene position: 4334682-4333957 (Counterclockwise)

Preceding gene: 91789968

Following gene: 91789966

Centisome position: 83.36

GC content: 64.88

Gene sequence:

>726_bases
ATGACGAGCAAAGCAAAAGAAGCCAGGCCCCGGCCCACGCGCAACGACGCGCAGCGCCAGTCCATCCTGGACGCGGCGTC
CCTGCTGTTTATCGAAAAAGGTTTCGGCGGGACCAACATCAATGACATCGCGGACGCGGTCGGTGTGAGCCGAACGGCGC
TTTATTACTACTTCCCCAGCAAGGAGTCGATGCTGGAGGCGCTGACCGAAGAAGTTACCGAAAAAGCCAGCCTGCTCGCC
GCCAGTGTTTCGGAGCGCGATCTCCTGCCACCGCGGGATGCGCTGCGGCAGCTGATCCTGCAGCATGCGGGCCTCATCCT
TTCGCATCCGCTGCAGTTCCGGGTGGTGGAGCGCAGCGAGAGCAACCTGCCCGAGCCGCACCGGTCGGCGGCCGAGGCGG
CCCGCCGCGCGGTGCTGGACCACTTTGTGCGCGTGATACAGCGCGGGATCGACGAAGGCCAGTTTCGCGACACCAACGCC
CATATCGCCGCGTTTTCGATCATCGGCATGTGCAACTGGTGCGCCTGGTGGTTCGACGCCAAGGGCAATGTGCCGGCCAG
CGGCGTGGCCGAGTCCATCGCCGACTTCAGCCTGCGCGCGCTGTTGCCTGACCACGCGCAACGCGCACGTGCGGGGTCGG
CGGAAGAGGCGGTCAGCCAGATGCGGGACGCGCTGACCGCTTTCGACAACCACCTGAAAAAGAAGCCGTCCCGGCATTCG
GGTTAA

Upstream 100 bases:

>100_bases
CAAGGTGCACCAGGGCCGCTCAGGGGGCAACGCCCTGTAGCGGGCTTTTGGGCTCTTGGCCGCCTCTTTCGGCGGCGCGC
GAGTGCGCTACATTTTGAAC

Downstream 100 bases:

>100_bases
CACTAACGTCAAATAATTGACACTTCTGTCGAATCTACCTATCATTGATCCAAATCAATGACGGGGCCGCGCTGCGGCTT
GACAGATGACAGCAACCGAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; TetR Family Regulatory Protein; Tetr Family Transcriptional Regulator; TetR Family Regulatory; HTH-Type Transcriptional Repressor; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Transcription Regulator Protein; TetR Family Transcriptional Repressor; TetR-Family Trasncriptional Regulator

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTSKAKEARPRPTRNDAQRQSILDAASLLFIEKGFGGTNINDIADAVGVSRTALYYYFPSKESMLEALTEEVTEKASLLA
ASVSERDLLPPRDALRQLILQHAGLILSHPLQFRVVERSESNLPEPHRSAAEAARRAVLDHFVRVIQRGIDEGQFRDTNA
HIAAFSIIGMCNWCAWWFDAKGNVPASGVAESIADFSLRALLPDHAQRARAGSAEEAVSQMRDALTAFDNHLKKKPSRHS
G

Sequences:

>Translated_241_residues
MTSKAKEARPRPTRNDAQRQSILDAASLLFIEKGFGGTNINDIADAVGVSRTALYYYFPSKESMLEALTEEVTEKASLLA
ASVSERDLLPPRDALRQLILQHAGLILSHPLQFRVVERSESNLPEPHRSAAEAARRAVLDHFVRVIQRGIDEGQFRDTNA
HIAAFSIIGMCNWCAWWFDAKGNVPASGVAESIADFSLRALLPDHAQRARAGSAEEAVSQMRDALTAFDNHLKKKPSRHS
G
>Mature_240_residues
TSKAKEARPRPTRNDAQRQSILDAASLLFIEKGFGGTNINDIADAVGVSRTALYYYFPSKESMLEALTEEVTEKASLLAA
SVSERDLLPPRDALRQLILQHAGLILSHPLQFRVVERSESNLPEPHRSAAEAARRAVLDHFVRVIQRGIDEGQFRDTNAH
IAAFSIIGMCNWCAWWFDAKGNVPASGVAESIADFSLRALLPDHAQRARAGSAEEAVSQMRDALTAFDNHLKKKPSRHSG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26571; Mature: 26440

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKAKEARPRPTRNDAQRQSILDAASLLFIEKGFGGTNINDIADAVGVSRTALYYYFPS
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHEEEEEECC
KESMLEALTEEVTEKASLLAASVSERDLLPPRDALRQLILQHAGLILSHPLQFRVVERSE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCHHEEEECCCC
SNLPEPHRSAAEAARRAVLDHFVRVIQRGIDEGQFRDTNAHIAAFSIIGMCNWCAWWFDA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
KGNVPASGVAESIADFSLRALLPDHAQRARAGSAEEAVSQMRDALTAFDNHLKKKPSRHS
CCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
G
C
>Mature Secondary Structure 
TSKAKEARPRPTRNDAQRQSILDAASLLFIEKGFGGTNINDIADAVGVSRTALYYYFPS
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHEEEEEECC
KESMLEALTEEVTEKASLLAASVSERDLLPPRDALRQLILQHAGLILSHPLQFRVVERSE
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHCCCHHEEEECCCC
SNLPEPHRSAAEAARRAVLDHFVRVIQRGIDEGQFRDTNAHIAAFSIIGMCNWCAWWFDA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
KGNVPASGVAESIADFSLRALLPDHAQRARAGSAEEAVSQMRDALTAFDNHLKKKPSRHS
CCCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA