| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is dhbE [H]
Identifier: 91789964
GI number: 91789964
Start: 4329878
End: 4331548
Strand: Reverse
Name: dhbE [H]
Synonym: Bpro_4125
Alternate gene names: 91789964
Gene position: 4331548-4329878 (Counterclockwise)
Preceding gene: 91789965
Following gene: 91789963
Centisome position: 83.29
GC content: 66.55
Gene sequence:
>1671_bases ATGCGAGACATTCAAAGCCCCATCGAGGGCGTGACCTACCCGTCCGACCAACGCGCCGCCGCCTCGCTGGCGAATGGTTC CTGGGTGGCCTCCACCGTGGGCGACTGCCTGCGCGCCACGGCGGCGCGCTACCCCGACAGGCAGGCCTTTATCAGCGATG AGCGAAGCCTGACTTTTCGCGAACTGGACGAGACAACGGATCGCCTGGCCGCTGCGCTGCTGGCCATGGGGCTGGCGACG GGCGACCGCGCCATCTTCCAGCTCGGCACGACGGTGGATACCGCCATCGTGCTGCTGGCCTGCTACAAGGCCGGCATCGT GCCGGTTTGCTCGCTGCCGCAGCACCGCGAGGTTGAAATCGGCCAGCTCGCCGCCCAGTCGGGCGCCCGCGGCTATTTTG TGCAGACCGATTTCGGCAGTTTCGACCTGGTCGGTTTAGCCCGGACCATGGCGGCCCGGCACCCGTCACTGGAACATCTG GTCGTGGTGCGCGGCGCGGTCGCCGGCCTGCCCGGCATCGACGCATTGATCGCCGACATGCCCCTTGAGCAGGCGCGGCA GCAGTTGGGCCATATTGCGCTCGGCATGGAAGACGTGCTGAGCTTCCAGCTTTCCGGCGGCACCACCGGTGTGCCCAAAA TCATTCCGCGCTTCCATGCCGAATACCTGGGGCATTCCGCCGCATGGATGCGGCGCTACCGCATCGACGCCGGCAGCCGC GTGATCTGGTCCCTGCCGCTGCTGCACAACGCCGGCCAGCTGTACACACTGATGCCCGCGGCCCTGATGGGCGTGACCGT GGTGCTGATGCCCAGGGTGGATATTGCCCGCATGCTGGCGCTGATTGAAGAACACCGCATCACGCATGCCTTGTCGATCG GCCCGATCGCGCCGCAGCTGCTGGCGTATACCGACATCGCCAGGCACGACCTGTCGTCGCTGCAGCTCTTTGCCACCATG AGCCGCGCCGACAAGCTGGAAAAGCACATTGGCGTGCCTTGCTCCAACCTGTACGGCATCACCGAAGGGCTGCTGCTCGG CTCGCCCGCCGATGCGCCGGCCTTTGCGCGGCACCACACGCAAGGCACTTCGGGTTGCGCGCACGACGAGATCCGCCTGC TGGTGCCCGAAACCGAAGAACCGAGTCCGCCCGGGGAGATGGGCGAGATGTGCTTTCGCGGCCCGTCCAGCCTGACCGGC TTCTTCGGCAATCCCGAGGCGAACGCCAAAGCCTTCACCTCCGACGGCTTCTACCGCACCGGCGACATGATGACCGCGCA CGTCGTCGACGGCGTCACCTGCTATGCCTTTGAAGGCCGGCTGCGCGACAACGTCAACCGCGGCGGCGAAAAAATCGGCT GCGAAGAGGTCGAAGGCTTCGTCAGCCAGCACCCGGCCGTGGCCGACGCCAAGCTGGTTGCCATGCCCGACCCGTTCTAC GGCGAGAAGGCCTGCGTCTTCATTGTTCCGCGCCCCGGCATGGTTGCACCCGACGTGAAGGCGCTCGGCGCCTTCCTCGT CGGCCTGGGCCTGGCCAAATACAAGTGCCCGGAACGGGTCGAGATCGTTGACAGCTACCCGCTGACGCGCGTGGGCAAGA TCGACAAGCCCGCATTGAAGCAGCGCATCGCCGACCAGCTGGCCGCCGAGGCGGCAGGGAGCCCGTCATGA
Upstream 100 bases:
>100_bases CACATTGAAGTGTTTGAGCGGGACCGTGTGGTCATTGCACCGGCCCGGCCCTGAGCACACGCTGAAACCCAAGAGAACCA AAGAGACCCCGGAGACAAGC
Downstream 100 bases:
>100_bases TCGCCACCGAGCAGGTGCTGGGCGAGCGGCCGCTGGTGATTCGCCGCCGCGTCAAGTGGGGCGATTGCGACCCGGCGGGC GTGGTCTACACGCCGATGTT
Product: AMP-dependent synthetase and ligase
Products: (2,3-Dihydroxybenzoyl)adenylate; Diphosphate [C]
Alternate protein names: Dihydroxybenzoic acid-activating enzyme [H]
Number of amino acids: Translated: 556; Mature: 556
Protein sequence:
>556_residues MRDIQSPIEGVTYPSDQRAAASLANGSWVASTVGDCLRATAARYPDRQAFISDERSLTFRELDETTDRLAAALLAMGLAT GDRAIFQLGTTVDTAIVLLACYKAGIVPVCSLPQHREVEIGQLAAQSGARGYFVQTDFGSFDLVGLARTMAARHPSLEHL VVVRGAVAGLPGIDALIADMPLEQARQQLGHIALGMEDVLSFQLSGGTTGVPKIIPRFHAEYLGHSAAWMRRYRIDAGSR VIWSLPLLHNAGQLYTLMPAALMGVTVVLMPRVDIARMLALIEEHRITHALSIGPIAPQLLAYTDIARHDLSSLQLFATM SRADKLEKHIGVPCSNLYGITEGLLLGSPADAPAFARHHTQGTSGCAHDEIRLLVPETEEPSPPGEMGEMCFRGPSSLTG FFGNPEANAKAFTSDGFYRTGDMMTAHVVDGVTCYAFEGRLRDNVNRGGEKIGCEEVEGFVSQHPAVADAKLVAMPDPFY GEKACVFIVPRPGMVAPDVKALGAFLVGLGLAKYKCPERVEIVDSYPLTRVGKIDKPALKQRIADQLAAEAAGSPS
Sequences:
>Translated_556_residues MRDIQSPIEGVTYPSDQRAAASLANGSWVASTVGDCLRATAARYPDRQAFISDERSLTFRELDETTDRLAAALLAMGLAT GDRAIFQLGTTVDTAIVLLACYKAGIVPVCSLPQHREVEIGQLAAQSGARGYFVQTDFGSFDLVGLARTMAARHPSLEHL VVVRGAVAGLPGIDALIADMPLEQARQQLGHIALGMEDVLSFQLSGGTTGVPKIIPRFHAEYLGHSAAWMRRYRIDAGSR VIWSLPLLHNAGQLYTLMPAALMGVTVVLMPRVDIARMLALIEEHRITHALSIGPIAPQLLAYTDIARHDLSSLQLFATM SRADKLEKHIGVPCSNLYGITEGLLLGSPADAPAFARHHTQGTSGCAHDEIRLLVPETEEPSPPGEMGEMCFRGPSSLTG FFGNPEANAKAFTSDGFYRTGDMMTAHVVDGVTCYAFEGRLRDNVNRGGEKIGCEEVEGFVSQHPAVADAKLVAMPDPFY GEKACVFIVPRPGMVAPDVKALGAFLVGLGLAKYKCPERVEIVDSYPLTRVGKIDKPALKQRIADQLAAEAAGSPS >Mature_556_residues MRDIQSPIEGVTYPSDQRAAASLANGSWVASTVGDCLRATAARYPDRQAFISDERSLTFRELDETTDRLAAALLAMGLAT GDRAIFQLGTTVDTAIVLLACYKAGIVPVCSLPQHREVEIGQLAAQSGARGYFVQTDFGSFDLVGLARTMAARHPSLEHL VVVRGAVAGLPGIDALIADMPLEQARQQLGHIALGMEDVLSFQLSGGTTGVPKIIPRFHAEYLGHSAAWMRRYRIDAGSR VIWSLPLLHNAGQLYTLMPAALMGVTVVLMPRVDIARMLALIEEHRITHALSIGPIAPQLLAYTDIARHDLSSLQLFATM SRADKLEKHIGVPCSNLYGITEGLLLGSPADAPAFARHHTQGTSGCAHDEIRLLVPETEEPSPPGEMGEMCFRGPSSLTG FFGNPEANAKAFTSDGFYRTGDMMTAHVVDGVTCYAFEGRLRDNVNRGGEKIGCEEVEGFVSQHPAVADAKLVAMPDPFY GEKACVFIVPRPGMVAPDVKALGAFLVGLGLAKYKCPERVEIVDSYPLTRVGKIDKPALKQRIADQLAAEAAGSPS
Specific function: Activation of the carboxylate group of 2,3-dihydroxy- benzoate (DHB), via ATP-dependent PPi exchange reactions, to the acyladenylate [H]
COG id: COG1021
COG function: function code Q; Peptide arylation enzymes
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=580, Percent_Identity=25.8620689655172, Blast_Score=164, Evalue=2e-40, Organism=Homo sapiens, GI38505220, Length=510, Percent_Identity=28.2352941176471, Blast_Score=126, Evalue=4e-29, Organism=Homo sapiens, GI58082049, Length=517, Percent_Identity=24.9516441005803, Blast_Score=116, Evalue=5e-26, Organism=Homo sapiens, GI115511026, Length=523, Percent_Identity=26.3862332695985, Blast_Score=113, Evalue=4e-25, Organism=Homo sapiens, GI157311624, Length=517, Percent_Identity=23.9845261121857, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI157311622, Length=517, Percent_Identity=23.9845261121857, Blast_Score=110, Evalue=4e-24, Organism=Homo sapiens, GI42544132, Length=530, Percent_Identity=23.2075471698113, Blast_Score=97, Evalue=6e-20, Organism=Homo sapiens, GI187761345, Length=556, Percent_Identity=24.2805755395683, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI187761343, Length=556, Percent_Identity=24.2805755395683, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI28416953, Length=552, Percent_Identity=25, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI122937307, Length=514, Percent_Identity=25.0972762645914, Blast_Score=90, Evalue=5e-18, Organism=Homo sapiens, GI40807357, Length=483, Percent_Identity=25.0517598343685, Blast_Score=81, Evalue=3e-15, Organism=Escherichia coli, GI1786810, Length=546, Percent_Identity=32.0512820512821, Blast_Score=247, Evalue=1e-66, Organism=Escherichia coli, GI145693145, Length=547, Percent_Identity=29.7989031078611, Blast_Score=201, Evalue=8e-53, Organism=Escherichia coli, GI1788107, Length=535, Percent_Identity=26.1682242990654, Blast_Score=124, Evalue=1e-29, Organism=Escherichia coli, GI221142682, Length=495, Percent_Identity=23.4343434343434, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1786529, Length=528, Percent_Identity=24.4318181818182, Blast_Score=80, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560308, Length=587, Percent_Identity=25.7240204429302, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI32563687, Length=542, Percent_Identity=22.3247232472325, Blast_Score=111, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17558820, Length=505, Percent_Identity=23.1683168316832, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI71994694, Length=551, Percent_Identity=24.1379310344828, Blast_Score=109, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71994703, Length=551, Percent_Identity=24.1379310344828, Blast_Score=109, Evalue=4e-24, Organism=Caenorhabditis elegans, GI71994690, Length=551, Percent_Identity=24.1379310344828, Blast_Score=108, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17557194, Length=559, Percent_Identity=24.1502683363148, Blast_Score=105, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17538037, Length=571, Percent_Identity=22.2416812609457, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17531443, Length=551, Percent_Identity=23.049001814882, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17559526, Length=542, Percent_Identity=21.7712177121771, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560140, Length=539, Percent_Identity=21.5213358070501, Blast_Score=74, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6319699, Length=349, Percent_Identity=25.7879656160458, Blast_Score=104, Evalue=4e-23, Organism=Drosophila melanogaster, GI24581924, Length=550, Percent_Identity=22.7272727272727, Blast_Score=122, Evalue=6e-28, Organism=Drosophila melanogaster, GI21355181, Length=494, Percent_Identity=23.0769230769231, Blast_Score=92, Evalue=9e-19, Organism=Drosophila melanogaster, GI21358303, Length=465, Percent_Identity=23.2258064516129, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI28573631, Length=552, Percent_Identity=23.731884057971, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI20130353, Length=552, Percent_Identity=23.731884057971, Blast_Score=84, Evalue=3e-16, Organism=Drosophila melanogaster, GI21356441, Length=483, Percent_Identity=22.7743271221532, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI18859661, Length=362, Percent_Identity=23.2044198895028, Blast_Score=72, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR011963 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 2.7.7.58; 2.3.1.- [C]
Molecular weight: Translated: 59656; Mature: 59656
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: PS00455 AMP_BINDING ; PS00228 TUBULIN_B_AUTOREG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDIQSPIEGVTYPSDQRAAASLANGSWVASTVGDCLRATAARYPDRQAFISDERSLTFR CCCHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHH ELDETTDRLAAALLAMGLATGDRAIFQLGTTVDTAIVLLACYKAGIVPVCSLPQHREVEI HHHHHHHHHHHHHHHHHHCCCCHHHEEECCHHHHHHHHHHHHHCCCCEECCCCCCCCCHH GQLAAQSGARGYFVQTDFGSFDLVGLARTMAARHPSLEHLVVVRGAVAGLPGIDALIADM HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCC PLEQARQQLGHIALGMEDVLSFQLSGGTTGVPKIIPRFHAEYLGHSAAWMRRYRIDAGSR CHHHHHHHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE VIWSLPLLHNAGQLYTLMPAALMGVTVVLMPRVDIARMLALIEEHRITHALSIGPIAPQL EEEEECHHHCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHEECCCCCHHH LAYTDIARHDLSSLQLFATMSRADKLEKHIGVPCSNLYGITEGLLLGSPADAPAFARHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEECCCCCCCHHHHHCC QGTSGCAHDEIRLLVPETEEPSPPGEMGEMCFRGPSSLTGFFGNPEANAKAFTSDGFYRT CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEC GDMMTAHVVDGVTCYAFEGRLRDNVNRGGEKIGCEEVEGFVSQHPAVADAKLVAMPDPFY CCCEEEHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCC GEKACVFIVPRPGMVAPDVKALGAFLVGLGLAKYKCPERVEIVDSYPLTRVGKIDKPALK CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCCCCCCCHHHH QRIADQLAAEAAGSPS HHHHHHHHHHCCCCCC >Mature Secondary Structure MRDIQSPIEGVTYPSDQRAAASLANGSWVASTVGDCLRATAARYPDRQAFISDERSLTFR CCCHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHH ELDETTDRLAAALLAMGLATGDRAIFQLGTTVDTAIVLLACYKAGIVPVCSLPQHREVEI HHHHHHHHHHHHHHHHHHCCCCHHHEEECCHHHHHHHHHHHHHCCCCEECCCCCCCCCHH GQLAAQSGARGYFVQTDFGSFDLVGLARTMAARHPSLEHLVVVRGAVAGLPGIDALIADM HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCC PLEQARQQLGHIALGMEDVLSFQLSGGTTGVPKIIPRFHAEYLGHSAAWMRRYRIDAGSR CHHHHHHHHHHHHCCHHHHHEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE VIWSLPLLHNAGQLYTLMPAALMGVTVVLMPRVDIARMLALIEEHRITHALSIGPIAPQL EEEEECHHHCCCCHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHEECCCCCHHH LAYTDIARHDLSSLQLFATMSRADKLEKHIGVPCSNLYGITEGLLLGSPADAPAFARHHT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCEECCCCCCCHHHHHCC QGTSGCAHDEIRLLVPETEEPSPPGEMGEMCFRGPSSLTGFFGNPEANAKAFTSDGFYRT CCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEC GDMMTAHVVDGVTCYAFEGRLRDNVNRGGEKIGCEEVEGFVSQHPAVADAKLVAMPDPFY CCCEEEHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCC GEKACVFIVPRPGMVAPDVKALGAFLVGLGLAKYKCPERVEIVDSYPLTRVGKIDKPALK CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCCCCCCCHHHH QRIADQLAAEAAGSPS HHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2,3-Dihydroxybenzoate; ATP [C]
Specific reaction: 2,3-Dihydroxybenzoate + ATP <==> (2,3-Dihydroxybenzoyl)adenylate + Diphosphate [C]
General reaction: Ligases; Forming Carbon-Sulfur Bonds; Acid-Thiol Ligases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8921902; 9384377; 8224884; 12221282 [H]