| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789961
Identifier: 91789961
GI number: 91789961
Start: 4327213
End: 4328196
Strand: Reverse
Name: 91789961
Synonym: Bpro_4122
Alternate gene names: NA
Gene position: 4328196-4327213 (Counterclockwise)
Preceding gene: 91789962
Following gene: 91789960
Centisome position: 83.23
GC content: 62.8
Gene sequence:
>984_bases ATGAAATTTCTGCAGATCAAAACATTGACAGGCGCGGCCGCCGTGCTGCTGGCTTGCGCCATGCTCCCGGCGGCGGCACA GACCTTTCCGGTCAAGCCGGTACGCGCCGTACTGCCGTATTCCGCCGGCAGCGGCCCGGACTCGGTGATGCGCAGCGTCG GCGAAAAGCTCACGCGCGACTGGGGCCAGCAACTGCTCGTCGACAACAAGCCCGGCGCCAACGGCTGGCTGGCGATCGGC GAAACCAAGCGTGCGCAGCCGGACGGTTACACGTTGATGACCGTGGATTCCACGCACATGACGCTGCAGCCGCACCTCTA CAAGCAACTGCCGTTTGACCCGGCCAAGGATTTTGAACCGGTGGCGCCGCTGTACAGGACAAACTTCTTCATCGTCGTCG GCGCCAACGCTCCGTGGAAAAACGTGACGGAACTGATCGCCGCAGCGAAAGCCAAAGACGGGCACCTGACCTACGGAAGC TGGGGCATAGGCAGCGTGGCCCATGTCGGCACCGCCATGTTTGAGCATTCCACCGGCGCGAAGATGACGCACGTGCCCTT CAAGGAGCTCCCCCAGCTTTACACCGCCGTGGCAACCGGCGAGGTGGACTGGGCTTTTGGTACCGCTGCGACCGTTGGCC CTCTGTACAAGGCAAAGAAGGTCAGGCTGCTGGCTTATGCGGGGCACAACCGCATGGCAGGTTATACCGATGTGCCGACG GTGGCTGAATCCGGTGGCCCGGCCGGTTTCGAGCTGCCGACCTGGGTGGCGATGTATGCCCCGAAAGGAACGCCCAAGCC GGTGGTTGACCGGATCCAGTCCGGGGTGGCCAAGGCGCTGGCGGATGCCGACATCAAGGACAGGCTGGCGAATTTCGGTT TTGAGCCCTGGATTGCGCCACCTTCGGATGTGACGAAGGCCGCTGAAGCCGACAAGCTCCGCTTCGCTGAAATCGTCAAG CGCTCCAGAATTGCCCTCGACTGA
Upstream 100 bases:
>100_bases CGCGGCCTTTGAAGCCCTTTGAAATCATTTGAAGTCATTTGAAGTTCATTTCCCCGCCACCCGATCACGCCCCCACCACG AGACCCACGGAGACAACACC
Downstream 100 bases:
>100_bases GCCCGGGCCAGGTCCTTCCTTTCATCCGGAGACAAAAATGACCATTCAAAATCGCAACATATTGTTTGCAGCGCGCGCAT TGATGGCCCTCATCTTCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: ORF5 [H]
Number of amino acids: Translated: 327; Mature: 327
Protein sequence:
>327_residues MKFLQIKTLTGAAAVLLACAMLPAAAQTFPVKPVRAVLPYSAGSGPDSVMRSVGEKLTRDWGQQLLVDNKPGANGWLAIG ETKRAQPDGYTLMTVDSTHMTLQPHLYKQLPFDPAKDFEPVAPLYRTNFFIVVGANAPWKNVTELIAAAKAKDGHLTYGS WGIGSVAHVGTAMFEHSTGAKMTHVPFKELPQLYTAVATGEVDWAFGTAATVGPLYKAKKVRLLAYAGHNRMAGYTDVPT VAESGGPAGFELPTWVAMYAPKGTPKPVVDRIQSGVAKALADADIKDRLANFGFEPWIAPPSDVTKAAEADKLRFAEIVK RSRIALD
Sequences:
>Translated_327_residues MKFLQIKTLTGAAAVLLACAMLPAAAQTFPVKPVRAVLPYSAGSGPDSVMRSVGEKLTRDWGQQLLVDNKPGANGWLAIG ETKRAQPDGYTLMTVDSTHMTLQPHLYKQLPFDPAKDFEPVAPLYRTNFFIVVGANAPWKNVTELIAAAKAKDGHLTYGS WGIGSVAHVGTAMFEHSTGAKMTHVPFKELPQLYTAVATGEVDWAFGTAATVGPLYKAKKVRLLAYAGHNRMAGYTDVPT VAESGGPAGFELPTWVAMYAPKGTPKPVVDRIQSGVAKALADADIKDRLANFGFEPWIAPPSDVTKAAEADKLRFAEIVK RSRIALD >Mature_327_residues MKFLQIKTLTGAAAVLLACAMLPAAAQTFPVKPVRAVLPYSAGSGPDSVMRSVGEKLTRDWGQQLLVDNKPGANGWLAIG ETKRAQPDGYTLMTVDSTHMTLQPHLYKQLPFDPAKDFEPVAPLYRTNFFIVVGANAPWKNVTELIAAAKAKDGHLTYGS WGIGSVAHVGTAMFEHSTGAKMTHVPFKELPQLYTAVATGEVDWAFGTAATVGPLYKAKKVRLLAYAGHNRMAGYTDVPT VAESGGPAGFELPTWVAMYAPKGTPKPVVDRIQSGVAKALADADIKDRLANFGFEPWIAPPSDVTKAAEADKLRFAEIVK RSRIALD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35106; Mature: 35106
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFLQIKTLTGAAAVLLACAMLPAAAQTFPVKPVRAVLPYSAGSGPDSVMRSVGEKLTRD CCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHH WGQQLLVDNKPGANGWLAIGETKRAQPDGYTLMTVDSTHMTLQPHLYKQLPFDPAKDFEP HHHHEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEECCHHHHHCCCCCCCCCCC VAPLYRTNFFIVVGANAPWKNVTELIAAAKAKDGHLTYGSWGIGSVAHVGTAMFEHSTGA CCHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCC KMTHVPFKELPQLYTAVATGEVDWAFGTAATVGPLYKAKKVRLLAYAGHNRMAGYTDVPT EEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCC VAESGGPAGFELPTWVAMYAPKGTPKPVVDRIQSGVAKALADADIKDRLANFGFEPWIAP HHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC PSDVTKAAEADKLRFAEIVKRSRIALD CHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKFLQIKTLTGAAAVLLACAMLPAAAQTFPVKPVRAVLPYSAGSGPDSVMRSVGEKLTRD CCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHH WGQQLLVDNKPGANGWLAIGETKRAQPDGYTLMTVDSTHMTLQPHLYKQLPFDPAKDFEP HHHHEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCEEECCHHHHHCCCCCCCCCCC VAPLYRTNFFIVVGANAPWKNVTELIAAAKAKDGHLTYGSWGIGSVAHVGTAMFEHSTGA CCHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHCCCCC KMTHVPFKELPQLYTAVATGEVDWAFGTAATVGPLYKAKKVRLLAYAGHNRMAGYTDVPT EEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEEEEEEEECCCCCCCCCCCCC VAESGGPAGFELPTWVAMYAPKGTPKPVVDRIQSGVAKALADADIKDRLANFGFEPWIAP HHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC PSDVTKAAEADKLRFAEIVKRSRIALD CHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9583950; 12910271 [H]