| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yiiP [C]
Identifier: 91789938
GI number: 91789938
Start: 4307135
End: 4308049
Strand: Reverse
Name: yiiP [C]
Synonym: Bpro_4099
Alternate gene names: 91789938
Gene position: 4308049-4307135 (Counterclockwise)
Preceding gene: 91789943
Following gene: 91789937
Centisome position: 82.84
GC content: 65.36
Gene sequence:
>915_bases ATGAGTCGACTGGACCTGCAATTTCTGACGCCGCAACGCCTGCTCAAGGCCTCCGTGGCGGTGGCGGCGATCACCATCGT GCTGAAGACCGGCGCGTGGTACATCACCGACTCGGTGGGCCTGCTGTCGGATGCGATGGAATCCTTTGTCAACCTGGCCA GCGCGCTTTTTGGCCTGGCCATGGTCACCATTGCCCAGCGACCGGCCGACGAGGACCATCCCTACGGCCACCACAAGGCC GAGTATTTCTCGTCCGGTTTTGAGGGCGCGCTGATCATTGGCGCCGCCGTGGCCATCATGTGGGCCGCGGGGCACCGTAT TTTTGAGCCCCAGCCGCTACAGCAGCTCGGCTGGGGCCTGGCGCTGTCTATTGTCAGCTCCGGCCTCAACGGCTTGCTGG CATGGGTGATGTTTCGCTCGGCCCGGGCGCATCGCTCGATTGCCCTGGAAGCCGATGCCCGGCACCTGGTGACCGATGTC TGGACCTCCGTCGGCGTCGTGGTCGGCATAGCGGCCGTGCTGGTCACCGGCTGGCTGTGGCTCGATGCGGTGGTGGCCTT CGGCGTGGCGTTGAACATTCTCCGGGAAGGCGCGCGGCTGATGTGGCGCTCGTCCCAGGGGCTGATGGATGAGGCGGTCG AGCCCGAGGTGCTGGCCGACATCCACAGGACGCTGGAAGAATTCAGGCACCCCACCATCCGTTTTGACCACGTGAGCACG CGTCGCTCCGGCCAGCGCTGTTTTGTGGACATGCACATGCACATGCCGGCCAGCTGGTCGCTGGGCCGCGCGGCTGCGCT GCGCACCAGCGTCGAGCAGGCGCTGATGAGCGCCGTGCCGGGGCTGCGTGCGACCATCCAGCTGTTGCCCAGCGATGTGG AGGCCCATTTTGACGACGAGAAAGACCTGATTTGA
Upstream 100 bases:
>100_bases CCAGAGGACGGCCCAGACCAGCCAACGTTGTCGCAGTTGCAGCATCGCCGCATTCTTGCATAGCTTGTTGGCGTGGCCCG GCATCGCTCACAATGGGCGC
Downstream 100 bases:
>100_bases AATGAGTGTTGACAAGAGAACGCTGCCATGAAGGCCGTGCTGCAGCGCGTGGCCGAAGCCCGCGTGGTGGTTGCCGGTGA GACCGTGGGCCAGATCGGTC
Product: cation diffusion facilitator family transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MSRLDLQFLTPQRLLKASVAVAAITIVLKTGAWYITDSVGLLSDAMESFVNLASALFGLAMVTIAQRPADEDHPYGHHKA EYFSSGFEGALIIGAAVAIMWAAGHRIFEPQPLQQLGWGLALSIVSSGLNGLLAWVMFRSARAHRSIALEADARHLVTDV WTSVGVVVGIAAVLVTGWLWLDAVVAFGVALNILREGARLMWRSSQGLMDEAVEPEVLADIHRTLEEFRHPTIRFDHVST RRSGQRCFVDMHMHMPASWSLGRAAALRTSVEQALMSAVPGLRATIQLLPSDVEAHFDDEKDLI
Sequences:
>Translated_304_residues MSRLDLQFLTPQRLLKASVAVAAITIVLKTGAWYITDSVGLLSDAMESFVNLASALFGLAMVTIAQRPADEDHPYGHHKA EYFSSGFEGALIIGAAVAIMWAAGHRIFEPQPLQQLGWGLALSIVSSGLNGLLAWVMFRSARAHRSIALEADARHLVTDV WTSVGVVVGIAAVLVTGWLWLDAVVAFGVALNILREGARLMWRSSQGLMDEAVEPEVLADIHRTLEEFRHPTIRFDHVST RRSGQRCFVDMHMHMPASWSLGRAAALRTSVEQALMSAVPGLRATIQLLPSDVEAHFDDEKDLI >Mature_303_residues SRLDLQFLTPQRLLKASVAVAAITIVLKTGAWYITDSVGLLSDAMESFVNLASALFGLAMVTIAQRPADEDHPYGHHKAE YFSSGFEGALIIGAAVAIMWAAGHRIFEPQPLQQLGWGLALSIVSSGLNGLLAWVMFRSARAHRSIALEADARHLVTDVW TSVGVVVGIAAVLVTGWLWLDAVVAFGVALNILREGARLMWRSSQGLMDEAVEPEVLADIHRTLEEFRHPTIRFDHVSTR RSGQRCFVDMHMHMPASWSLGRAAALRTSVEQALMSAVPGLRATIQLLPSDVEAHFDDEKDLI
Specific function: Unknown
COG id: COG0053
COG function: function code P; Predicted Co/Zn/Cd cation transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family [H]
Homologues:
Organism=Homo sapiens, GI57164948, Length=247, Percent_Identity=25.5060728744939, Blast_Score=69, Evalue=4e-12, Organism=Escherichia coli, GI1790349, Length=272, Percent_Identity=27.5735294117647, Blast_Score=106, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002524 [H]
Pfam domain/function: PF01545 Cation_efflux [H]
EC number: NA
Molecular weight: Translated: 33255; Mature: 33124
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLDLQFLTPQRLLKASVAVAAITIVLKTGAWYITDSVGLLSDAMESFVNLASALFGLA CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH MVTIAQRPADEDHPYGHHKAEYFSSGFEGALIIGAAVAIMWAAGHRIFEPQPLQQLGWGL HHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH ALSIVSSGLNGLLAWVMFRSARAHRSIALEADARHLVTDVWTSVGVVVGIAAVLVTGWLW HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDAVVAFGVALNILREGARLMWRSSQGLMDEAVEPEVLADIHRTLEEFRHPTIRFDHVST HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEECCHH RRSGQRCFVDMHMHMPASWSLGRAAALRTSVEQALMSAVPGLRATIQLLPSDVEAHFDDE CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCC KDLI CCCC >Mature Secondary Structure SRLDLQFLTPQRLLKASVAVAAITIVLKTGAWYITDSVGLLSDAMESFVNLASALFGLA CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH MVTIAQRPADEDHPYGHHKAEYFSSGFEGALIIGAAVAIMWAAGHRIFEPQPLQQLGWGL HHHHHHCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH ALSIVSSGLNGLLAWVMFRSARAHRSIALEADARHLVTDVWTSVGVVVGIAAVLVTGWLW HHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LDAVVAFGVALNILREGARLMWRSSQGLMDEAVEPEVLADIHRTLEEFRHPTIRFDHVST HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCEEEECCHH RRSGQRCFVDMHMHMPASWSLGRAAALRTSVEQALMSAVPGLRATIQLLPSDVEAHFDDE CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHCCCCC KDLI CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]