| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789865
Identifier: 91789865
GI number: 91789865
Start: 4224666
End: 4225325
Strand: Direct
Name: 91789865
Synonym: Bpro_4025
Alternate gene names: NA
Gene position: 4224666-4225325 (Clockwise)
Preceding gene: 91789864
Following gene: 91789866
Centisome position: 81.24
GC content: 60.61
Gene sequence:
>660_bases ATGGCGAAAAAAGCGCCGCGCCGTACGGCAGAGCGAATTCTGGAGGTCACGCTGGACCTGTTCAATCGCTTTGGCGAGCC CAATGTCTCGACCACACTGATTTCTGCCGAACTGAGCATCAGCCCCGGCAACCTTTACTACCACTACCCCGCCAAAGACG AGTTGATCAACTCGCTGTTTGACCGCTACGAGCGCTCGCTGACCGAGCTGCTGAATGCCAGCGACGGTGTGCGCAATGTC GAAGACGCCTGGTTTTTCATGCACACGCTGTTTGAGCTGATCTGGCAATACCGCTTTTTGTACCGTGACCTCAACGACCT GCTGAGCAAGAACCGCCGGCTGGAAACCCACTTTCAATGGGTGCTCAAAAACAAGACCCGCGCCGTCAAGGCAATGCTCG ACGGCATGAGCCGCGCCGGCGCCGTGACGATTGATTCGCGCGAGGTGGAAGCCACGGCCACCAGCATGGTGGTGGTGCTG ACCTACTGGCTGAGCTTTGAGTACGTGCGCGACCCGCGCAACGCCCTGGAGCCTGGCAACGCACAGGCCGCGCTGCTGCG CGGTGCGCACCACGTGCTGAACCTGCTGATTCCTTACCTCGAACAGGGCCAGCGCGCCCACCTGCAGGCCCTGATCGGCG CCTACAACACGCCGGCATAA
Upstream 100 bases:
>100_bases ATTGCAAACAGGCTTCGACAAGCTCAGCCCGAACGGGGTGGTAGCGCTTAAATGACCAGCATTGGGGTTAGAGTACAGAA CAATACGAGGTAGACAATTT
Downstream 100 bases:
>100_bases GCCCACTGCCCGCCTCCCAACTTCCAACTTTCCACTTCCCAATTTCGCTTTCCTCACCCATAACACCAACAACGTTCAAT CAAGGAGACAACACATGGCC
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator PhaD; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Reguator TetR Family; HTH-Type Transcriptional Regulator TetR-Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Tetr Family; Transcriptional Regulator Transcription Regulator Protein; TetR/AcrR Family Transcriptional Regulator
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MAKKAPRRTAERILEVTLDLFNRFGEPNVSTTLISAELSISPGNLYYHYPAKDELINSLFDRYERSLTELLNASDGVRNV EDAWFFMHTLFELIWQYRFLYRDLNDLLSKNRRLETHFQWVLKNKTRAVKAMLDGMSRAGAVTIDSREVEATATSMVVVL TYWLSFEYVRDPRNALEPGNAQAALLRGAHHVLNLLIPYLEQGQRAHLQALIGAYNTPA
Sequences:
>Translated_219_residues MAKKAPRRTAERILEVTLDLFNRFGEPNVSTTLISAELSISPGNLYYHYPAKDELINSLFDRYERSLTELLNASDGVRNV EDAWFFMHTLFELIWQYRFLYRDLNDLLSKNRRLETHFQWVLKNKTRAVKAMLDGMSRAGAVTIDSREVEATATSMVVVL TYWLSFEYVRDPRNALEPGNAQAALLRGAHHVLNLLIPYLEQGQRAHLQALIGAYNTPA >Mature_218_residues AKKAPRRTAERILEVTLDLFNRFGEPNVSTTLISAELSISPGNLYYHYPAKDELINSLFDRYERSLTELLNASDGVRNVE DAWFFMHTLFELIWQYRFLYRDLNDLLSKNRRLETHFQWVLKNKTRAVKAMLDGMSRAGAVTIDSREVEATATSMVVVLT YWLSFEYVRDPRNALEPGNAQAALLRGAHHVLNLLIPYLEQGQRAHLQALIGAYNTPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25162; Mature: 25031
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKKAPRRTAERILEVTLDLFNRFGEPNVSTTLISAELSISPGNLYYHYPAKDELINSLF CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHH DRYERSLTELLNASDGVRNVEDAWFFMHTLFELIWQYRFLYRDLNDLLSKNRRLETHFQW HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VLKNKTRAVKAMLDGMSRAGAVTIDSREVEATATSMVVVLTYWLSFEYVRDPRNALEPGN HHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC AQAALLRGAHHVLNLLIPYLEQGQRAHLQALIGAYNTPA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC >Mature Secondary Structure AKKAPRRTAERILEVTLDLFNRFGEPNVSTTLISAELSISPGNLYYHYPAKDELINSLF CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCEEEECCCHHHHHHHHH DRYERSLTELLNASDGVRNVEDAWFFMHTLFELIWQYRFLYRDLNDLLSKNRRLETHFQW HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH VLKNKTRAVKAMLDGMSRAGAVTIDSREVEATATSMVVVLTYWLSFEYVRDPRNALEPGN HHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCC AQAALLRGAHHVLNLLIPYLEQGQRAHLQALIGAYNTPA HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA