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The map label for this gene is yckA [H]

Identifier: 91789814

GI number: 91789814

Start: 4167398

End: 4168057

Strand: Reverse

Name: yckA [H]

Synonym: Bpro_3974

Alternate gene names: 91789814

Gene position: 4168057-4167398 (Counterclockwise)

Preceding gene: 91789815

Following gene: 91789813

Centisome position: 80.15

GC content: 58.64

Gene sequence:

>660_bases
ATGATGATCGAAAGCTTCGGGTTTCCCGAATTCATGTTTTTGATCCGGTCGCTGGGCTGGACGCTGGCGCTGACCGCCTC
GTCACTCCTGCTGGGCAGTGTGATTGGTGCTTTTTTTGCGATTGCGCGGGTGTCTCACAACAATCTGCTGCGCAATGCCG
CGGTTCTCTACATTCAGGTGCTGCAGGGCCTGCCGGTTCTGCTGGTGTTGTTTCTGGCGTATTTTGGGCTGGCCTATATG
GGTTTCGATCCGCCGGCCCTGGTCATCGCCACCATCGCCCTGGGCCTGTACGCCGGGGCCTATCTGGCCGACATCTGGCG
TGGCGCGATGGAGTCGGTGCCCTACCAGCAATGGGAAGCCTCGTCCTCGCTGGCCATGACACGGGCCCAGCAGTTTCGCT
TCATCATCCTGCCGCAGTCGGTGCGTATTTCGCTGCCGCCCACGGTCGGCTTCCTGGTCCAACTGATCAAGAACACCTCG
ATCGTGTCCGTCGTGGGCTACATCGACCTGATGCGCGCCGGCGAGCACATCGAGACCAGCCTGCACTCCCCCTTCATGGT
TTACGGAATCGTGGCGCTGCTGTATTTCTCGCTGTGCTTTCCGTTGTCCCACCTGAGCAAAATGTTAGAGAGGAAAGTAC
ATGCCGATCGTCAAAATTGA

Upstream 100 bases:

>100_bases
CCATGGCGCTGCTGATGAAGTGGGGCCTGGCCATGTTGGGCCGGGCACTGTTCCCGGCGCAGCAGGACGCCAAAGCCAAT
GCGGTTTCGAAAGGCCTGGG

Downstream 100 bases:

>100_bases
AAATGTCGTCAAGCGTTTTGGCGCCGTCGAGGTGCTCAAGGGTGTCTCGCTGGACGTGGAGGCGGGGCAGGTGGTGGCCA
TCATCGGGCGCAGCGGTTCG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MMIESFGFPEFMFLIRSLGWTLALTASSLLLGSVIGAFFAIARVSHNNLLRNAAVLYIQVLQGLPVLLVLFLAYFGLAYM
GFDPPALVIATIALGLYAGAYLADIWRGAMESVPYQQWEASSSLAMTRAQQFRFIILPQSVRISLPPTVGFLVQLIKNTS
IVSVVGYIDLMRAGEHIETSLHSPFMVYGIVALLYFSLCFPLSHLSKMLERKVHADRQN

Sequences:

>Translated_219_residues
MMIESFGFPEFMFLIRSLGWTLALTASSLLLGSVIGAFFAIARVSHNNLLRNAAVLYIQVLQGLPVLLVLFLAYFGLAYM
GFDPPALVIATIALGLYAGAYLADIWRGAMESVPYQQWEASSSLAMTRAQQFRFIILPQSVRISLPPTVGFLVQLIKNTS
IVSVVGYIDLMRAGEHIETSLHSPFMVYGIVALLYFSLCFPLSHLSKMLERKVHADRQN
>Mature_219_residues
MMIESFGFPEFMFLIRSLGWTLALTASSLLLGSVIGAFFAIARVSHNNLLRNAAVLYIQVLQGLPVLLVLFLAYFGLAYM
GFDPPALVIATIALGLYAGAYLADIWRGAMESVPYQQWEASSSLAMTRAQQFRFIILPQSVRISLPPTVGFLVQLIKNTS
IVSVVGYIDLMRAGEHIETSLHSPFMVYGIVALLYFSLCFPLSHLSKMLERKVHADRQN

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=31.4009661835749, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI87082239, Length=207, Percent_Identity=29.4685990338164, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787030, Length=212, Percent_Identity=30.6603773584906, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=28.2178217821782, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787087, Length=234, Percent_Identity=26.4957264957265, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1786874, Length=218, Percent_Identity=25.6880733944954, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788646, Length=203, Percent_Identity=29.5566502463054, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI48994930, Length=104, Percent_Identity=33.6538461538462, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786873, Length=212, Percent_Identity=26.4150943396226, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787086, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24296; Mature: 24296

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIESFGFPEFMFLIRSLGWTLALTASSLLLGSVIGAFFAIARVSHNNLLRNAAVLYIQV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQGLPVLLVLFLAYFGLAYMGFDPPALVIATIALGLYAGAYLADIWRGAMESVPYQQWEA
HHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
SSSLAMTRAQQFRFIILPQSVRISLPPTVGFLVQLIKNTSIVSVVGYIDLMRAGEHIETS
HHHHHHHHHHHCEEEEECCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHH
LHSPFMVYGIVALLYFSLCFPLSHLSKMLERKVHADRQN
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MMIESFGFPEFMFLIRSLGWTLALTASSLLLGSVIGAFFAIARVSHNNLLRNAAVLYIQV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQGLPVLLVLFLAYFGLAYMGFDPPALVIATIALGLYAGAYLADIWRGAMESVPYQQWEA
HHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
SSSLAMTRAQQFRFIILPQSVRISLPPTVGFLVQLIKNTSIVSVVGYIDLMRAGEHIETS
HHHHHHHHHHHCEEEEECCCEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHH
LHSPFMVYGIVALLYFSLCFPLSHLSKMLERKVHADRQN
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]