| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789757
Identifier: 91789757
GI number: 91789757
Start: 4110380
End: 4112236
Strand: Direct
Name: 91789757
Synonym: Bpro_3916
Alternate gene names: NA
Gene position: 4110380-4112236 (Clockwise)
Preceding gene: 91789756
Following gene: 91789758
Centisome position: 79.04
GC content: 64.94
Gene sequence:
>1857_bases ATGACGGCCCCGAACGACTCCGCGCGCTTTGTGCCGCCCGCTGAACCCTCGCTCGCGATGGGCGTGATCGGCAACTGCGC GTTCAGCGCGCTGATTGACATCCGCGGGCGCATTGTCTGGTGCTGCCTGCCGCGCTTTGACGGCGACCCGGTGTTCAATG CGCTGCTGCAGCCCGGTACCGGCAGGATCGACGGCGCCCATACCAATACCGATACGCAGCCCAGCGCTTTTTCCATTGAA ATCGAGGATTTTGCCGAGTCCCGGCAATGGTATGAGCCCAATACCGCCGTGCTGCATACCCAGCTGTTTGACAAAAGCGG CCAGGGTATTGAGATCACCGACTTCGCGCCGCGCTTTTTCAGCCGCTCACGTTTTTTCCGGCCCATGACGCTGGTGCGGC GCGTGCGCCCCCTCTCCGGCGCGCCCCGCATTCGCGTCTCGCTGGATGTCCGTTTTGACTGGGGCCGGCGTGCACCGCTG ATCACCCAGGGCAGCAACCACCTGCGTTATGTGGGCGATGCGCTGACGCTGCGGCTGAACACCGACGCGCCGCTGTCGCA CCTGCTGGCCCGGCAGCCCTTCGTGCTGACCCGCGAGCACAACTTTCTGCTGGGTGCCGACGAGTCGCTGGCCGAGGGCA TTGCCGACACGGCGCGCCTGTTTGAACAGGAGACCGTCTCGTATTGGAAAAAATGGAGCCAGCGCCTGCACATCCCGCTG GAATGGCAGGAAGCCGTGATACGCGCCGCGATCACGCTCAAGCTGTCCCTCTTTGAAGACACCGGCGCCATCGTGGCGGC CATGACCACCAGCATTCCCGAGGCGCCCGGCAGCCAGCGCAACTGGGACTACCGTTTTTGCTGGCTGCGCGATGCTTTCT TTGTGGTGCGCGCCCTCAACAGCCTGTCGGAGGTCGGCACCATGGAAGACTACCTGCGCTGGCTCAGCAACGTGGTGGTG CAGGCCAACGGCGGGCACATCCAGCCGCTGTACGGCATTGGCCTGGAGCGCGAGCTGCCGGAGTCCGTGATGGACCATCT GGGCGGCTACCGCGGCATGGGGCCGGTGCGCGTGGGCAACCAGGCGCAGGAGCACTTCCAGCATGACGTGTATGGCAATG TAGTGCTGGGTGCGGCGCAGGCCTTTCACGACCACCGGCTGCTGCACCGCGCCGGCCTGGCCGAGTTCCAGCGGCTCGAA GCAGTGGGCGAGCAGGCCGCTCGCACCTATGACCAGCCCGACGCCGGCATGTGGGAGCTGCGCACCCGTGCCCGGGTCCA CACCTCGTCGGCCCTGATGTGCTGGGCGGCCTGCGACCGGCTGGCCAAGATCGCCCTGGTGCTTCACCTTCCCGAGCGTG CAGCCTACTGGCAGGACCATGCACAGCGCATGCAGGAGAACATTTTGCGGAAGGCCTGGAGCGAGGAACGCCAGGCCTTT GCCGAGAGCTTTGGCGGCCGCGACCTGGACGCCAGTGTGCTGCTGATGATTGAAGTGGGCTTCATCGACCCGAAGGATCC GCGCTTCATTGCCACCGTCGACGCGCTGGAAACCCATTTGTGCGACGGCCCCTACATGCGCCGCTACGAAGCGCCCGATG ATTTCGGCAAACCCGAGACCGCCTTCAACATCTGCACCTTCTGGCGCATTGATGCGCTGGCGCGCATAGGGCGCAAGGCG CAGGCGCGCGAGATTTTTGAGACCATGCTGGCCGCGCGCAACCACGTAGGCCTGCTCTCCGAAGACACGCACCCGGCCAG CGGCGAGATGTGGGGCAACTTTCCGCAAACCTATTCCATGGTGGGCATCATCAACGCGGCGGTCCGGCTTTCGGCGCCTT GGGAATCGCAGATATGA
Upstream 100 bases:
>100_bases GCGCCACCCTGGCCAGGCACCGGTGCGCGGCGCCGGCCGCACTGCGGCAGTGGCTGCAGGCTGCCAGCCAGAATTCGGGC CACTGGCGCGGGATCAGCCC
Downstream 100 bases:
>100_bases GGTACACCCCCGTCGGCGGCTCACTGCGTGTAGCCCCTTCCCCCCTTGCAGGGGGCGGCGCCTGCGGCCCGGCGAAGCCG GTTCCGCGGCCCCTGCTGGC
Product: glycoside hydrolase 15-like protein
Products: NA
Alternate protein names: Glycosyl Hydrolase; Glycosyl Hydrolase Family; Glycoside Hydrolase Family; Glycosy Hydrolase Family Protein; Glucoamylase; Glycoside Hydrolase Family Protein; Trehalose-Phosphatase/Glycoside Hydrolase; Glucoamylase-Like Glycosyl Hydrolase; Glycosyl Hydrolase Protein; Glucoamylase Or Related Glycosyl Hydrolase; Trehalose 6-Phosphatase; Trehalose Phosphatase; Glucoamylase Or Related Glycosyl Hydrolase Protein; Hydrolase; Glycosyl Hydrolase Glycosyl Hydrolase Family; Glycosyl Hydrolase Family Protein; Glucoamylase-Related Protein Trehalase
Number of amino acids: Translated: 618; Mature: 617
Protein sequence:
>618_residues MTAPNDSARFVPPAEPSLAMGVIGNCAFSALIDIRGRIVWCCLPRFDGDPVFNALLQPGTGRIDGAHTNTDTQPSAFSIE IEDFAESRQWYEPNTAVLHTQLFDKSGQGIEITDFAPRFFSRSRFFRPMTLVRRVRPLSGAPRIRVSLDVRFDWGRRAPL ITQGSNHLRYVGDALTLRLNTDAPLSHLLARQPFVLTREHNFLLGADESLAEGIADTARLFEQETVSYWKKWSQRLHIPL EWQEAVIRAAITLKLSLFEDTGAIVAAMTTSIPEAPGSQRNWDYRFCWLRDAFFVVRALNSLSEVGTMEDYLRWLSNVVV QANGGHIQPLYGIGLERELPESVMDHLGGYRGMGPVRVGNQAQEHFQHDVYGNVVLGAAQAFHDHRLLHRAGLAEFQRLE AVGEQAARTYDQPDAGMWELRTRARVHTSSALMCWAACDRLAKIALVLHLPERAAYWQDHAQRMQENILRKAWSEERQAF AESFGGRDLDASVLLMIEVGFIDPKDPRFIATVDALETHLCDGPYMRRYEAPDDFGKPETAFNICTFWRIDALARIGRKA QAREIFETMLAARNHVGLLSEDTHPASGEMWGNFPQTYSMVGIINAAVRLSAPWESQI
Sequences:
>Translated_618_residues MTAPNDSARFVPPAEPSLAMGVIGNCAFSALIDIRGRIVWCCLPRFDGDPVFNALLQPGTGRIDGAHTNTDTQPSAFSIE IEDFAESRQWYEPNTAVLHTQLFDKSGQGIEITDFAPRFFSRSRFFRPMTLVRRVRPLSGAPRIRVSLDVRFDWGRRAPL ITQGSNHLRYVGDALTLRLNTDAPLSHLLARQPFVLTREHNFLLGADESLAEGIADTARLFEQETVSYWKKWSQRLHIPL EWQEAVIRAAITLKLSLFEDTGAIVAAMTTSIPEAPGSQRNWDYRFCWLRDAFFVVRALNSLSEVGTMEDYLRWLSNVVV QANGGHIQPLYGIGLERELPESVMDHLGGYRGMGPVRVGNQAQEHFQHDVYGNVVLGAAQAFHDHRLLHRAGLAEFQRLE AVGEQAARTYDQPDAGMWELRTRARVHTSSALMCWAACDRLAKIALVLHLPERAAYWQDHAQRMQENILRKAWSEERQAF AESFGGRDLDASVLLMIEVGFIDPKDPRFIATVDALETHLCDGPYMRRYEAPDDFGKPETAFNICTFWRIDALARIGRKA QAREIFETMLAARNHVGLLSEDTHPASGEMWGNFPQTYSMVGIINAAVRLSAPWESQI >Mature_617_residues TAPNDSARFVPPAEPSLAMGVIGNCAFSALIDIRGRIVWCCLPRFDGDPVFNALLQPGTGRIDGAHTNTDTQPSAFSIEI EDFAESRQWYEPNTAVLHTQLFDKSGQGIEITDFAPRFFSRSRFFRPMTLVRRVRPLSGAPRIRVSLDVRFDWGRRAPLI TQGSNHLRYVGDALTLRLNTDAPLSHLLARQPFVLTREHNFLLGADESLAEGIADTARLFEQETVSYWKKWSQRLHIPLE WQEAVIRAAITLKLSLFEDTGAIVAAMTTSIPEAPGSQRNWDYRFCWLRDAFFVVRALNSLSEVGTMEDYLRWLSNVVVQ ANGGHIQPLYGIGLERELPESVMDHLGGYRGMGPVRVGNQAQEHFQHDVYGNVVLGAAQAFHDHRLLHRAGLAEFQRLEA VGEQAARTYDQPDAGMWELRTRARVHTSSALMCWAACDRLAKIALVLHLPERAAYWQDHAQRMQENILRKAWSEERQAFA ESFGGRDLDASVLLMIEVGFIDPKDPRFIATVDALETHLCDGPYMRRYEAPDDFGKPETAFNICTFWRIDALARIGRKAQ AREIFETMLAARNHVGLLSEDTHPASGEMWGNFPQTYSMVGIINAAVRLSAPWESQI
Specific function: Unknown
COG id: COG3387
COG function: function code G; Glucoamylase and related glycosyl hydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69676; Mature: 69545
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAPNDSARFVPPAEPSLAMGVIGNCAFSALIDIRGRIVWCCLPRFDGDPVFNALLQPGT CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCC GRIDGAHTNTDTQPSAFSIEIEDFAESRQWYEPNTAVLHTQLFDKSGQGIEITDFAPRFF CCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEEHHCCCCCCEEEECCCHHHH SRSRFFRPMTLVRRVRPLSGAPRIRVSLDVRFDWGRRAPLITQGSNHLRYVGDALTLRLN HHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCEEEECCEEEEEEC TDAPLSHLLARQPFVLTREHNFLLGADESLAEGIADTARLFEQETVSYWKKWSQRLHIPL CCCCHHHHHHCCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EWQEAVIRAAITLKLSLFEDTGAIVAAMTTSIPEAPGSQRNWDYRFCWLRDAFFVVRALN HHHHHHHHHHHEEEEEEECCCCCEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH SLSEVGTMEDYLRWLSNVVVQANGGHIQPLYGIGLERELPESVMDHLGGYRGMGPVRVGN HHHHCCCHHHHHHHHHHEEEECCCCEECCHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCC QAQEHFQHDVYGNVVLGAAQAFHDHRLLHRAGLAEFQRLEAVGEQAARTYDQPDAGMWEL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RTRARVHTSSALMCWAACDRLAKIALVLHLPERAAYWQDHAQRMQENILRKAWSEERQAF HHHHHHCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AESFGGRDLDASVLLMIEVGFIDPKDPRFIATVDALETHLCDGPYMRRYEAPDDFGKPET HHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEHHHHHHHCCCCCHHHCCCCCCCCCCCCH AFNICTFWRIDALARIGRKAQAREIFETMLAARNHVGLLSEDTHPASGEMWGNFPQTYSM HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH VGIINAAVRLSAPWESQI HHHHHHHEEECCCCCCCC >Mature Secondary Structure TAPNDSARFVPPAEPSLAMGVIGNCAFSALIDIRGRIVWCCLPRFDGDPVFNALLQPGT CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCC GRIDGAHTNTDTQPSAFSIEIEDFAESRQWYEPNTAVLHTQLFDKSGQGIEITDFAPRFF CCCCCCCCCCCCCCCEEEEEHHHHHCCCCCCCCCCEEEEEEHHCCCCCCEEEECCCHHHH SRSRFFRPMTLVRRVRPLSGAPRIRVSLDVRFDWGRRAPLITQGSNHLRYVGDALTLRLN HHHHCCCHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCEEEECCEEEEEEC TDAPLSHLLARQPFVLTREHNFLLGADESLAEGIADTARLFEQETVSYWKKWSQRLHIPL CCCCHHHHHHCCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC EWQEAVIRAAITLKLSLFEDTGAIVAAMTTSIPEAPGSQRNWDYRFCWLRDAFFVVRALN HHHHHHHHHHHEEEEEEECCCCCEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH SLSEVGTMEDYLRWLSNVVVQANGGHIQPLYGIGLERELPESVMDHLGGYRGMGPVRVGN HHHHCCCHHHHHHHHHHEEEECCCCEECCHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCC QAQEHFQHDVYGNVVLGAAQAFHDHRLLHRAGLAEFQRLEAVGEQAARTYDQPDAGMWEL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RTRARVHTSSALMCWAACDRLAKIALVLHLPERAAYWQDHAQRMQENILRKAWSEERQAF HHHHHHCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AESFGGRDLDASVLLMIEVGFIDPKDPRFIATVDALETHLCDGPYMRRYEAPDDFGKPET HHHCCCCCCCCEEEEEEEEECCCCCCCCEEEEHHHHHHHCCCCCHHHCCCCCCCCCCCCH AFNICTFWRIDALARIGRKAQAREIFETMLAARNHVGLLSEDTHPASGEMWGNFPQTYSM HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH VGIINAAVRLSAPWESQI HHHHHHHEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA