| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is aceE [H]
Identifier: 91789675
GI number: 91789675
Start: 4019417
End: 4022119
Strand: Direct
Name: aceE [H]
Synonym: Bpro_3831
Alternate gene names: 91789675
Gene position: 4019417-4022119 (Clockwise)
Preceding gene: 91789673
Following gene: 91789688
Centisome position: 77.29
GC content: 63.97
Gene sequence:
>2703_bases ATGAACGATTCCACCCCCCACCATCTCCTGATGCAAACCGCCGACGCTTTCACGCCAGACCCTGACCCACAGGAAACCGC GGAGTGGCGCGAGGCGTTTGAAGCCCTGGCAGCCACGCAGGGCCCGGCCCGCGCGCGGCACATGCTGGACGAGCTGAGCC GCGTTGCCCGCAACCGCCGCATCGGCTGGCAGCCCGAGCTGTCCACGCCCTACATGAACACCATCGGCGTGAACGAGCAG CCAGTCTTTCCCGGCGATCTGGCGCTGGAGGAACGGCTGGCTTCGCTGATGCGCTGGAACGCGCTGGCCATGGTGGTGCG CGCCAACCAGGCCGAGCTTGGCGGCTCCAGCGAACTGGGCGGCCACATTGCCAGCTACGCCAGCGCCGCCGATTTGTTTG AAACCGGCTTCAACCATTTCTTTCATGCGCGCGAAGGCACGGGCGAAATTGACGGTGTCAAGCAGCATCGCGGCGACCTG GTGTTCTTCCAGCCGCACAGCGCGCCCGGTGTGTATGCGCGCGCCTACCTCGAAGGCCGGCTCACTGAAAAGGACTTGAG CTTTTACCGCCAGGAACTCACCGCACCCGGCCAGGGTGCGCAAGGCCTGTCCAGCTACCCCCACCCCTACCTGATGCCCG GGTTCTGGCAGTTCCCGACAGGCTCCATGGGCATAGGCCCGATCAGCTCGATCTACCATGCGCGCTTCATGCGCTACCTC ACGCACCGGCGGCTGCTCGACTGCAGCGGCCGCAAGGTCTGGGGCGTGTTCGGCGACGGCGAGATGGACGAGCCCGAGTC CATGAGCGCCCTCACCCTGGCAGCACGCGAAGGGCTGGACAACCTGGTCTGGGTCGTCAACTGCAATCTGCAGCGGCTCG ACGGCCCTGTGCGCGGCAACGGCCGCATCATCGACGAGCTGGAAAAGCTCTTTGCCGGCGCAGGCTGGAACGTCATCAAG CTGGTCTGGGGCAGCGACTGGGACGGCCTGTTTGCGCGCGACCTGACCGGCGCGCTGACGCAGGCCTTTGCCCACACGGT GGACGGCCAGATGCAGACCTTTGCCGCCAAGGACGGCCGCTTTAACCGCGACAACTTCTTCGGACAGAACGAGGAACTGG CCCGACTGGCCCAGGGCATGACCGACGAACAGATCGACCGCCTCAAGCGCGGCGGCCACGACCTGGTGAAAATCCATGCG GCCTATGCAGCGGCGGCCAACCACAAAGGCCAGCCCACGGTGATCCTGGCGCACACCAAAAAAGGCTATGGCATGGGCAG CGCCGGCCAGGGCAAGATGACCACGCATTCGCAAAAGAAATTTGACGAGACCGATCTTCTGGAGTTTCGCAACCGCTTCA ATTTGCCCTTGACCGACGAGCAGGCCAAACACATCGCGTTTTACAAGCCCGCCGATGACAGCCCCGAGATGCGCTACATG CACGCGCAGCGTGCGGCCCTGGGTGGCTACCTGCCCAAACGCGACACCACGGCCGAGGTGATTCCTGTACCGGCCTTGCC AAGTTACGCCCAGTTTGCGCTTGGTGCTGCAGCCAAGGAAATGAGCACCACCATGGCCTTTGTGCGCATGCTGGGCAGCC TGCTGAAGGACCCGGCCCTGGGCCCGAAGATCGTGCCCATCGTGGCGGACGAAGCGCGCACCTTCGGCATGGCCAACCTG TTCAAGCAGGTCGGCATTTACTCCAGTGTGGGCCAGCGCTACGCACCCGAAGACATCGGCTCGGTGCTGAGCTACCGCGA GGCCCTTGACGGGCAGATTCTGGAAGAGGGCATCAGCGAAGCCGGGGCACTCGCCAGCTGGACGGCCGCGGCCACCAGCT ACAGCGTCCACGGCTTGGCCATGCTGCCGTTTTATATCTATTACTCGATGTTCGGCTTCCAGCGCGTCGGCGACCAGATC TGGGCCGCAGCCGACCAGCGGGCGCGCGGCTTCCTGCTGGGCGCCACTTCAGGCCGCACCACGCTGGGCGGCGAAGGCCT GCAGCACCAGGACGGCTCCAGCCACCTGATCGCCGCCACCATTCCCAACTGCAAGGCCTATGACCCGGCCTTTGCCTGCG AGCTGGCCGTCATCATCGACCGGGGCATGCGCGAGATGATGGTGGAGCAAAAAGACGTGTTCTATTACGTCACGATGATG AACGAGAACTACGCCCAGCCAGATCTGCGGCCGGGGTCGGAGGCGGACATCATTCGCGGATGCTATCAATTCAATAGCTA TCAAGGTCCGGCAAGCGAAGGGAAATCAGCCAAAAATCCACAACATGTGACGCTGATGGGTTCAGGGGCCATCCTGACCG AGGTGATCAAGGCGGCGCAGCAACTGGCAGACCAGGGCATTCATGCCACCGTTTACAGCGTGACCAGCTGGAGCGAGCTC GCACGCGATGGCGCGGCTTGCCAGCAGCGGATGCTGAACGGCGAAGGAATGACCGAAGGCGCAAAGACTGACGCGTTCAT CAGGCAGCAACTGCACGCCAGCCAGGGGCCCATCATTGCCGCCACCGACTACGTGCGTGCCGTGCCCGAGAGCATTCGCG CTTTCCTGCCCGAAGGCCGCGCCTACCTGACGCTGGGCACCGACGGCTTCGGCCGCAGCGACACGCGGGCCGCCTTGCGC GAATTTTTTGGCGTCAATGCACAAAGCATCGTCAACGCGGCACGGCATCTGCTGAAGGCTTGA
Upstream 100 bases:
>100_bases GTAAATTTAGTCAATTGCAGAATTTTATGCCGCCAGTTACGCATTTATCCCCATATTTAGGCAACACCTTTTGCGGGAAG ATGCGTACAGTGGATTTGCC
Downstream 100 bases:
>100_bases GCCGGTACCCGGCGTGAGGGGTTCAGCAAGGACGGCGCTGGCCGCCCACCTGCCCGCCGGATTCAATTGGCTTCAATGCA GCATTCACGGCCGGCATTGG
Product: 2-oxoacid dehydrogenase subunit E1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 900; Mature: 900
Protein sequence:
>900_residues MNDSTPHHLLMQTADAFTPDPDPQETAEWREAFEALAATQGPARARHMLDELSRVARNRRIGWQPELSTPYMNTIGVNEQ PVFPGDLALEERLASLMRWNALAMVVRANQAELGGSSELGGHIASYASAADLFETGFNHFFHAREGTGEIDGVKQHRGDL VFFQPHSAPGVYARAYLEGRLTEKDLSFYRQELTAPGQGAQGLSSYPHPYLMPGFWQFPTGSMGIGPISSIYHARFMRYL THRRLLDCSGRKVWGVFGDGEMDEPESMSALTLAAREGLDNLVWVVNCNLQRLDGPVRGNGRIIDELEKLFAGAGWNVIK LVWGSDWDGLFARDLTGALTQAFAHTVDGQMQTFAAKDGRFNRDNFFGQNEELARLAQGMTDEQIDRLKRGGHDLVKIHA AYAAAANHKGQPTVILAHTKKGYGMGSAGQGKMTTHSQKKFDETDLLEFRNRFNLPLTDEQAKHIAFYKPADDSPEMRYM HAQRAALGGYLPKRDTTAEVIPVPALPSYAQFALGAAAKEMSTTMAFVRMLGSLLKDPALGPKIVPIVADEARTFGMANL FKQVGIYSSVGQRYAPEDIGSVLSYREALDGQILEEGISEAGALASWTAAATSYSVHGLAMLPFYIYYSMFGFQRVGDQI WAAADQRARGFLLGATSGRTTLGGEGLQHQDGSSHLIAATIPNCKAYDPAFACELAVIIDRGMREMMVEQKDVFYYVTMM NENYAQPDLRPGSEADIIRGCYQFNSYQGPASEGKSAKNPQHVTLMGSGAILTEVIKAAQQLADQGIHATVYSVTSWSEL ARDGAACQQRMLNGEGMTEGAKTDAFIRQQLHASQGPIIAATDYVRAVPESIRAFLPEGRAYLTLGTDGFGRSDTRAALR EFFGVNAQSIVNAARHLLKA
Sequences:
>Translated_900_residues MNDSTPHHLLMQTADAFTPDPDPQETAEWREAFEALAATQGPARARHMLDELSRVARNRRIGWQPELSTPYMNTIGVNEQ PVFPGDLALEERLASLMRWNALAMVVRANQAELGGSSELGGHIASYASAADLFETGFNHFFHAREGTGEIDGVKQHRGDL VFFQPHSAPGVYARAYLEGRLTEKDLSFYRQELTAPGQGAQGLSSYPHPYLMPGFWQFPTGSMGIGPISSIYHARFMRYL THRRLLDCSGRKVWGVFGDGEMDEPESMSALTLAAREGLDNLVWVVNCNLQRLDGPVRGNGRIIDELEKLFAGAGWNVIK LVWGSDWDGLFARDLTGALTQAFAHTVDGQMQTFAAKDGRFNRDNFFGQNEELARLAQGMTDEQIDRLKRGGHDLVKIHA AYAAAANHKGQPTVILAHTKKGYGMGSAGQGKMTTHSQKKFDETDLLEFRNRFNLPLTDEQAKHIAFYKPADDSPEMRYM HAQRAALGGYLPKRDTTAEVIPVPALPSYAQFALGAAAKEMSTTMAFVRMLGSLLKDPALGPKIVPIVADEARTFGMANL FKQVGIYSSVGQRYAPEDIGSVLSYREALDGQILEEGISEAGALASWTAAATSYSVHGLAMLPFYIYYSMFGFQRVGDQI WAAADQRARGFLLGATSGRTTLGGEGLQHQDGSSHLIAATIPNCKAYDPAFACELAVIIDRGMREMMVEQKDVFYYVTMM NENYAQPDLRPGSEADIIRGCYQFNSYQGPASEGKSAKNPQHVTLMGSGAILTEVIKAAQQLADQGIHATVYSVTSWSEL ARDGAACQQRMLNGEGMTEGAKTDAFIRQQLHASQGPIIAATDYVRAVPESIRAFLPEGRAYLTLGTDGFGRSDTRAALR EFFGVNAQSIVNAARHLLKA >Mature_900_residues MNDSTPHHLLMQTADAFTPDPDPQETAEWREAFEALAATQGPARARHMLDELSRVARNRRIGWQPELSTPYMNTIGVNEQ PVFPGDLALEERLASLMRWNALAMVVRANQAELGGSSELGGHIASYASAADLFETGFNHFFHAREGTGEIDGVKQHRGDL VFFQPHSAPGVYARAYLEGRLTEKDLSFYRQELTAPGQGAQGLSSYPHPYLMPGFWQFPTGSMGIGPISSIYHARFMRYL THRRLLDCSGRKVWGVFGDGEMDEPESMSALTLAAREGLDNLVWVVNCNLQRLDGPVRGNGRIIDELEKLFAGAGWNVIK LVWGSDWDGLFARDLTGALTQAFAHTVDGQMQTFAAKDGRFNRDNFFGQNEELARLAQGMTDEQIDRLKRGGHDLVKIHA AYAAAANHKGQPTVILAHTKKGYGMGSAGQGKMTTHSQKKFDETDLLEFRNRFNLPLTDEQAKHIAFYKPADDSPEMRYM HAQRAALGGYLPKRDTTAEVIPVPALPSYAQFALGAAAKEMSTTMAFVRMLGSLLKDPALGPKIVPIVADEARTFGMANL FKQVGIYSSVGQRYAPEDIGSVLSYREALDGQILEEGISEAGALASWTAAATSYSVHGLAMLPFYIYYSMFGFQRVGDQI WAAADQRARGFLLGATSGRTTLGGEGLQHQDGSSHLIAATIPNCKAYDPAFACELAVIIDRGMREMMVEQKDVFYYVTMM NENYAQPDLRPGSEADIIRGCYQFNSYQGPASEGKSAKNPQHVTLMGSGAILTEVIKAAQQLADQGIHATVYSVTSWSEL ARDGAACQQRMLNGEGMTEGAKTDAFIRQQLHASQGPIIAATDYVRAVPESIRAFLPEGRAYLTLGTDGFGRSDTRAALR EFFGVNAQSIVNAARHLLKA
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG2609
COG function: function code C; Pyruvate dehydrogenase complex, dehydrogenase (E1) component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786304, Length=888, Percent_Identity=51.1261261261261, Blast_Score=861, Evalue=0.0,
Paralogues:
None
Copy number: 1140 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 400 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004660 - InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005474 [H]
Pfam domain/function: PF00456 Transketolase_N [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 98662; Mature: 98662
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDSTPHHLLMQTADAFTPDPDPQETAEWREAFEALAATQGPARARHMLDELSRVARNRR CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC IGWQPELSTPYMNTIGVNEQPVFPGDLALEERLASLMRWNALAMVVRANQAELGGSSELG CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCHHCCCCCCHHH GHIASYASAADLFETGFNHFFHAREGTGEIDGVKQHRGDLVFFQPHSAPGVYARAYLEGR HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHCCCEEEECCCCCCCHHHHHHHHCC LTEKDLSFYRQELTAPGQGAQGLSSYPHPYLMPGFWQFPTGSMGIGPISSIYHARFMRYL CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH THRRLLDCSGRKVWGVFGDGEMDEPESMSALTLAAREGLDNLVWVVNCNLQRLDGPVRGN HHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCC GRIIDELEKLFAGAGWNVIKLVWGSDWDGLFARDLTGALTQAFAHTVDGQMQTFAAKDGR CCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC FNRDNFFGQNEELARLAQGMTDEQIDRLKRGGHDLVKIHAAYAAAANHKGQPTVILAHTK CCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCEEEEEECC KGYGMGSAGQGKMTTHSQKKFDETDLLEFRNRFNLPLTDEQAKHIAFYKPADDSPEMRYM CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHH HAQRAALGGYLPKRDTTAEVIPVPALPSYAQFALGAAAKEMSTTMAFVRMLGSLLKDPAL HHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GPKIVPIVADEARTFGMANLFKQVGIYSSVGQRYAPEDIGSVLSYREALDGQILEEGISE CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHH AGALASWTAAATSYSVHGLAMLPFYIYYSMFGFQRVGDQIWAAADQRARGFLLGATSGRT HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC TLGGEGLQHQDGSSHLIAATIPNCKAYDPAFACELAVIIDRGMREMMVEQKDVFYYVTMM CCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE NENYAQPDLRPGSEADIIRGCYQFNSYQGPASEGKSAKNPQHVTLMGSGAILTEVIKAAQ CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEEECCHHHHHHHHHHH QLADQGIHATVYSVTSWSELARDGAACQQRMLNGEGMTEGAKTDAFIRQQLHASQGPIIA HHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEE ATDYVRAVPESIRAFLPEGRAYLTLGTDGFGRSDTRAALREFFGVNAQSIVNAARHLLKA EHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC >Mature Secondary Structure MNDSTPHHLLMQTADAFTPDPDPQETAEWREAFEALAATQGPARARHMLDELSRVARNRR CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC IGWQPELSTPYMNTIGVNEQPVFPGDLALEERLASLMRWNALAMVVRANQAELGGSSELG CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEECCHHCCCCCCHHH GHIASYASAADLFETGFNHFFHAREGTGEIDGVKQHRGDLVFFQPHSAPGVYARAYLEGR HHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHCCCEEEECCCCCCCHHHHHHHHCC LTEKDLSFYRQELTAPGQGAQGLSSYPHPYLMPGFWQFPTGSMGIGPISSIYHARFMRYL CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH THRRLLDCSGRKVWGVFGDGEMDEPESMSALTLAAREGLDNLVWVVNCNLQRLDGPVRGN HHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCC GRIIDELEKLFAGAGWNVIKLVWGSDWDGLFARDLTGALTQAFAHTVDGQMQTFAAKDGR CCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCC FNRDNFFGQNEELARLAQGMTDEQIDRLKRGGHDLVKIHAAYAAAANHKGQPTVILAHTK CCCCCCCCCCHHHHHHHCCCCHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCEEEEEECC KGYGMGSAGQGKMTTHSQKKFDETDLLEFRNRFNLPLTDEQAKHIAFYKPADDSPEMRYM CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCHHHHH HAQRAALGGYLPKRDTTAEVIPVPALPSYAQFALGAAAKEMSTTMAFVRMLGSLLKDPAL HHHHHHHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GPKIVPIVADEARTFGMANLFKQVGIYSSVGQRYAPEDIGSVLSYREALDGQILEEGISE CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHH AGALASWTAAATSYSVHGLAMLPFYIYYSMFGFQRVGDQIWAAADQRARGFLLGATSGRT HCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC TLGGEGLQHQDGSSHLIAATIPNCKAYDPAFACELAVIIDRGMREMMVEQKDVFYYVTMM CCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE NENYAQPDLRPGSEADIIRGCYQFNSYQGPASEGKSAKNPQHVTLMGSGAILTEVIKAAQ CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCEEEEEECCHHHHHHHHHHH QLADQGIHATVYSVTSWSELARDGAACQQRMLNGEGMTEGAKTDAFIRQQLHASQGPIIA HHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEE ATDYVRAVPESIRAFLPEGRAYLTLGTDGFGRSDTRAALREFFGVNAQSIVNAARHLLKA EHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9171401; 10984043 [H]