| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is 91789583
Identifier: 91789583
GI number: 91789583
Start: 3943465
End: 3945087
Strand: Reverse
Name: 91789583
Synonym: Bpro_3738
Alternate gene names: NA
Gene position: 3945087-3943465 (Counterclockwise)
Preceding gene: 91789584
Following gene: 91789582
Centisome position: 75.86
GC content: 60.75
Gene sequence:
>1623_bases ATGAGCACAGGCAATCTCAAGCTGGCATTCGTGATAGAGGCTCTGGACAAAGCGACAGAGCCTCTTCGCCGCGTTGGCCG TGCCATTGACAAGGTGGCTGAGCCGATCAAGCGCATCGGCGCGCTGTCTGACCAGACGGCGTTTCGCTTTGGGCGCTTCA TGGGCAACCGGCTGCAGAACCAGATGGGTGTGGTGCGTGAGCGCTTCGATACCTTGAAGGGCAGCGCCCAGGGCATTGCG CAGGGCTTTGGTGCCGTCAGCCTGGCTGCGGGCGGTGTGTTTTTTGCGCTGAAGCGGACGATTGACGCAACTGACCACGC GGTGGATGTCAGCAAGAAGCTGGGCATTGGCGTGGAGGCATACCAGCGTATGGGCTACGCGGCGCAGCTCAATGGCAGCA ACCAGGAAGAAATGGGCCAGGCGCTGCAGTTCTTGAGCCAGAACATGGTGGAGGCGATCAATGGCAGCAAGGAGGCCGCC ACCTGGTTCGCCCGCGTGGGCATCCCGCTTGACCAGCTCAAGAAGATGAACGTGGCCCAGGTGTTTGAAAAGGTGGCCGA CAAGTTCCAGTCTGTGGGCGACGCCGGCCAGAACGCCGAGAAAAAGATTGCCGTGATGAAGGCCCTGATGGGCCGTGGCG GTGCCGAGCTGAAACAGGTGCTTGACCTGGGCAGCGCTGGCCTGAAGACCTTCTACAAGGAAGCCGACAAGGTTGGCGCG GTGGTCGGTGGATCCACCGCTGAGGCAATGGCTGACTTCAATGACAACTTCGACCGCCTGAAGTTCTCGATTTTTGGCGT CATGTCGGCCATTGCGGAAAACGCGCTGCCGGCACTGGACGCAATGGTGAAGAAGTTCACGGAGATCAACTCGGCCAACC GCGAAGAGTGGGGCCAGCGCCTGGGCAAGATGATTGGCGAGATCGTCAACGCGCTGCCCGGTTTCTTGAAGTCGCTGGGC CAGATCACCGGGGCCCTGGTGATGATTGTCGGTGCTGCTGACACCGTGGCGCAGGTCTTTGGTGGTTGGGAGAACGTGAT CATCGGCCTTGCCGCGCTGCTTGGCTTGAAGCTGGCTGTTGGCATCTTTGGCCTCGGCAAGGCCATCATCGCCTTGATCC CCACGGTGTGGAGCCTGGGCGTTGCGCTTATGTCGACGCCCGTGGGCTGGATTCTGTTGGCTGTTGCAGCCATCGCGGGC ATCGTGTTCCTGATCTACAAGAACTGGGCACCTATCAAGCAGTTCTTCATCGGCCTGTGGGACGGCGTTAAATCGGCTTT CAGCACGGTTTACGACTGGATCATGAACAAGATCATGACGGTGGTCGAGCTGGCCGCCAAGGTGGGCCAGACCGTCAAAA ACCTGTTCAGCGGTGAGATGAACGGCTCGGTGACCTATGACGCGATGGGGAACGCCACGGGCGTTGCCGATGCGCCCCTG GCCATTGCGCCGCCCGTGCCCTCCGCCCTGCCCACCCGCAACATGATGCAAAAGGCTGACGTGGGCGGCACGATCAAGCT GCAGATCGACCAGGACGGCCGCGCCCGCGTGGCAGAGGTCAAGAAGAACAACCCGGCTGTGGACTTTGACGTTTACAGCG GCATGGTGATGGCGACGCCATGA
Upstream 100 bases:
>100_bases TCACGTTTCACTGGTCAAACAGAGAGCTGATGGCGATGGACATCGACGAGCTGATGGAGTGGCACCAGCAGGTAAGCCGA ATTAACAAACACTTGAATAA
Downstream 100 bases:
>100_bases GCTGGTTAGACGAACTTCAGCTGGCGAGCTTTCGCGGCGTTCCCTTCTTTGTGGACAGCGCGGAGCTGGGCTTTGGCCGC CGTAGCGTGGTGCATGAATA
Product: hypothetical protein
Products: NA
Alternate protein names: Phage-Related Tail Protein; Tail Length Tape Measure Protein; Tail Length Phage Protein; Phage Tail Length Tape Measure Protein; Phage Tail Tape Measure Protein
Number of amino acids: Translated: 540; Mature: 539
Protein sequence:
>540_residues MSTGNLKLAFVIEALDKATEPLRRVGRAIDKVAEPIKRIGALSDQTAFRFGRFMGNRLQNQMGVVRERFDTLKGSAQGIA QGFGAVSLAAGGVFFALKRTIDATDHAVDVSKKLGIGVEAYQRMGYAAQLNGSNQEEMGQALQFLSQNMVEAINGSKEAA TWFARVGIPLDQLKKMNVAQVFEKVADKFQSVGDAGQNAEKKIAVMKALMGRGGAELKQVLDLGSAGLKTFYKEADKVGA VVGGSTAEAMADFNDNFDRLKFSIFGVMSAIAENALPALDAMVKKFTEINSANREEWGQRLGKMIGEIVNALPGFLKSLG QITGALVMIVGAADTVAQVFGGWENVIIGLAALLGLKLAVGIFGLGKAIIALIPTVWSLGVALMSTPVGWILLAVAAIAG IVFLIYKNWAPIKQFFIGLWDGVKSAFSTVYDWIMNKIMTVVELAAKVGQTVKNLFSGEMNGSVTYDAMGNATGVADAPL AIAPPVPSALPTRNMMQKADVGGTIKLQIDQDGRARVAEVKKNNPAVDFDVYSGMVMATP
Sequences:
>Translated_540_residues MSTGNLKLAFVIEALDKATEPLRRVGRAIDKVAEPIKRIGALSDQTAFRFGRFMGNRLQNQMGVVRERFDTLKGSAQGIA QGFGAVSLAAGGVFFALKRTIDATDHAVDVSKKLGIGVEAYQRMGYAAQLNGSNQEEMGQALQFLSQNMVEAINGSKEAA TWFARVGIPLDQLKKMNVAQVFEKVADKFQSVGDAGQNAEKKIAVMKALMGRGGAELKQVLDLGSAGLKTFYKEADKVGA VVGGSTAEAMADFNDNFDRLKFSIFGVMSAIAENALPALDAMVKKFTEINSANREEWGQRLGKMIGEIVNALPGFLKSLG QITGALVMIVGAADTVAQVFGGWENVIIGLAALLGLKLAVGIFGLGKAIIALIPTVWSLGVALMSTPVGWILLAVAAIAG IVFLIYKNWAPIKQFFIGLWDGVKSAFSTVYDWIMNKIMTVVELAAKVGQTVKNLFSGEMNGSVTYDAMGNATGVADAPL AIAPPVPSALPTRNMMQKADVGGTIKLQIDQDGRARVAEVKKNNPAVDFDVYSGMVMATP >Mature_539_residues STGNLKLAFVIEALDKATEPLRRVGRAIDKVAEPIKRIGALSDQTAFRFGRFMGNRLQNQMGVVRERFDTLKGSAQGIAQ GFGAVSLAAGGVFFALKRTIDATDHAVDVSKKLGIGVEAYQRMGYAAQLNGSNQEEMGQALQFLSQNMVEAINGSKEAAT WFARVGIPLDQLKKMNVAQVFEKVADKFQSVGDAGQNAEKKIAVMKALMGRGGAELKQVLDLGSAGLKTFYKEADKVGAV VGGSTAEAMADFNDNFDRLKFSIFGVMSAIAENALPALDAMVKKFTEINSANREEWGQRLGKMIGEIVNALPGFLKSLGQ ITGALVMIVGAADTVAQVFGGWENVIIGLAALLGLKLAVGIFGLGKAIIALIPTVWSLGVALMSTPVGWILLAVAAIAGI VFLIYKNWAPIKQFFIGLWDGVKSAFSTVYDWIMNKIMTVVELAAKVGQTVKNLFSGEMNGSVTYDAMGNATGVADAPLA IAPPVPSALPTRNMMQKADVGGTIKLQIDQDGRARVAEVKKNNPAVDFDVYSGMVMATP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57456; Mature: 57324
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTGNLKLAFVIEALDKATEPLRRVGRAIDKVAEPIKRIGALSDQTAFRFGRFMGNRLQN CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QMGVVRERFDTLKGSAQGIAQGFGAVSLAAGGVFFALKRTIDATDHAVDVSKKLGIGVEA HHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH YQRMGYAAQLNGSNQEEMGQALQFLSQNMVEAINGSKEAATWFARVGIPLDQLKKMNVAQ HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCHHH VFEKVADKFQSVGDAGQNAEKKIAVMKALMGRGGAELKQVLDLGSAGLKTFYKEADKVGA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHH VVGGSTAEAMADFNDNFDRLKFSIFGVMSAIAENALPALDAMVKKFTEINSANREEWGQR HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LGKMIGEIVNALPGFLKSLGQITGALVMIVGAADTVAQVFGGWENVIIGLAALLGLKLAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH GIFGLGKAIIALIPTVWSLGVALMSTPVGWILLAVAAIAGIVFLIYKNWAPIKQFFIGLW HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH DGVKSAFSTVYDWIMNKIMTVVELAAKVGQTVKNLFSGEMNGSVTYDAMGNATGVADAPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC AIAPPVPSALPTRNMMQKADVGGTIKLQIDQDGRARVAEVKKNNPAVDFDVYSGMVMATP EECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEHHHCCEEEECC >Mature Secondary Structure STGNLKLAFVIEALDKATEPLRRVGRAIDKVAEPIKRIGALSDQTAFRFGRFMGNRLQN CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH QMGVVRERFDTLKGSAQGIAQGFGAVSLAAGGVFFALKRTIDATDHAVDVSKKLGIGVEA HHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHH YQRMGYAAQLNGSNQEEMGQALQFLSQNMVEAINGSKEAATWFARVGIPLDQLKKMNVAQ HHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHCCCHHH VFEKVADKFQSVGDAGQNAEKKIAVMKALMGRGGAELKQVLDLGSAGLKTFYKEADKVGA HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHH VVGGSTAEAMADFNDNFDRLKFSIFGVMSAIAENALPALDAMVKKFTEINSANREEWGQR HCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LGKMIGEIVNALPGFLKSLGQITGALVMIVGAADTVAQVFGGWENVIIGLAALLGLKLAV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH GIFGLGKAIIALIPTVWSLGVALMSTPVGWILLAVAAIAGIVFLIYKNWAPIKQFFIGLW HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH DGVKSAFSTVYDWIMNKIMTVVELAAKVGQTVKNLFSGEMNGSVTYDAMGNATGVADAPL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCC AIAPPVPSALPTRNMMQKADVGGTIKLQIDQDGRARVAEVKKNNPAVDFDVYSGMVMATP EECCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCEEEHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA