| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ycfK [C]
Identifier: 91789576
GI number: 91789576
Start: 3937552
End: 3938448
Strand: Reverse
Name: ycfK [C]
Synonym: Bpro_3731
Alternate gene names: 91789576
Gene position: 3938448-3937552 (Counterclockwise)
Preceding gene: 91789577
Following gene: 91789575
Centisome position: 75.74
GC content: 57.3
Gene sequence:
>897_bases ATGGATCGCATTAACACAGCATCAAAAGCTGTTGACCTCTTCGGGGCCGGCAAGCATGGCTGGAAGAACGCCAATCTCGG ACTCGGCGTTACACCTACCGACTTCAACGCGGAATTTTGCAACGGCGTGCAGGAAGAGATTTTGGCCATCATCGAGGCCG GAGGGCAGGTGCCTGCGATAGCGACGCGCAACCAGATGCTTCTGGCGCTGCGTGCGGCCGGTGTGTTCACCACGCCCGCG CAGTTTGACAACACTACGAAGGCCGCGACCACGGCTTTCGTGCAGCGAGCGCTTGGAAATTATCAAGACGCCATATCGGT CGCAGCGAACACCGTTCTGACCGCCGCCGACTTCGGTAAGGTAATTTTTGTCGACGCCAGCGGAGGGCCCCGCACCATCA CATTGCCGCTCGTTACGCAGTCTGGTGCCGCGCTGAAAATATACAAGTCGGACTCATCAGCCAATGCTGTGACGGTTGTA ACCTCCGGTTCGAATGTGATTGTCGGCACGAACAACTTCGCGGGCGGCACCAGCTCATCGTCCGTCATTCTGCGCACTGT GGGAGATTTCCTCGATTTATGCGCTACGGGCGGTGGATCGTATTACGGTCTTTCCAGCGGCGGCGCCGCAAGCGTTGCAG CGAGTGGCTACCAGAAGCTGCCCAGCGGTCTGATCATTCAGTGGGGTGTTTTTACCGGCAACGCGACGCCCGGTAATCCG GTTGCGGTGACCTTCCCATTAACTTTCCCCACCGCTTTATACAGCCTCACATTCGGCTCTGCAGGGGGTACGACGGCCAC TTGCGCTGCTTGGTCCGATACCCAGTTGCTGACCGGATTCAATGGGCGCGCTTCGATTGCATCAAATTCAAATTATTGGG CTGCCATTGGCAAATAA
Upstream 100 bases:
>100_bases GGACCTTTCCTCGCCCTCGCTGATCGTTTGTCCGATCACTGAGCGCAAGCCGGCACACACCAACGTATTTTTCGCCTACA CGGCATAAGGAGCCTAACCA
Downstream 100 bases:
>100_bases GGAAAATCATGTTCTATTCAAAATTGACAGGCGGGTTTTACTCCGCCGACCTCCACGGGTCTCGCACGCTGGTCATAGCC GACGCAGCGTGGGTGCCGCC
Product: tail fiber protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 298
Protein sequence:
>298_residues MDRINTASKAVDLFGAGKHGWKNANLGLGVTPTDFNAEFCNGVQEEILAIIEAGGQVPAIATRNQMLLALRAAGVFTTPA QFDNTTKAATTAFVQRALGNYQDAISVAANTVLTAADFGKVIFVDASGGPRTITLPLVTQSGAALKIYKSDSSANAVTVV TSGSNVIVGTNNFAGGTSSSSVILRTVGDFLDLCATGGGSYYGLSSGGAASVAASGYQKLPSGLIIQWGVFTGNATPGNP VAVTFPLTFPTALYSLTFGSAGGTTATCAAWSDTQLLTGFNGRASIASNSNYWAAIGK
Sequences:
>Translated_298_residues MDRINTASKAVDLFGAGKHGWKNANLGLGVTPTDFNAEFCNGVQEEILAIIEAGGQVPAIATRNQMLLALRAAGVFTTPA QFDNTTKAATTAFVQRALGNYQDAISVAANTVLTAADFGKVIFVDASGGPRTITLPLVTQSGAALKIYKSDSSANAVTVV TSGSNVIVGTNNFAGGTSSSSVILRTVGDFLDLCATGGGSYYGLSSGGAASVAASGYQKLPSGLIIQWGVFTGNATPGNP VAVTFPLTFPTALYSLTFGSAGGTTATCAAWSDTQLLTGFNGRASIASNSNYWAAIGK >Mature_298_residues MDRINTASKAVDLFGAGKHGWKNANLGLGVTPTDFNAEFCNGVQEEILAIIEAGGQVPAIATRNQMLLALRAAGVFTTPA QFDNTTKAATTAFVQRALGNYQDAISVAANTVLTAADFGKVIFVDASGGPRTITLPLVTQSGAALKIYKSDSSANAVTVV TSGSNVIVGTNNFAGGTSSSSVILRTVGDFLDLCATGGGSYYGLSSGGAASVAASGYQKLPSGLIIQWGVFTGNATPGNP VAVTFPLTFPTALYSLTFGSAGGTTATCAAWSDTQLLTGFNGRASIASNSNYWAAIGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30232; Mature: 30232
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRINTASKAVDLFGAGKHGWKNANLGLGVTPTDFNAEFCNGVQEEILAIIEAGGQVPAI CCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCEE ATRNQMLLALRAAGVFTTPAQFDNTTKAATTAFVQRALGNYQDAISVAANTVLTAADFGK ECCCEEEEEEEECCCEECCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCCCC VIFVDASGGPRTITLPLVTQSGAALKIYKSDSSANAVTVVTSGSNVIVGTNNFAGGTSSS EEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCC SVILRTVGDFLDLCATGGGSYYGLSSGGAASVAASGYQKLPSGLIIQWGVFTGNATPGNP CCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCC VAVTFPLTFPTALYSLTFGSAGGTTATCAAWSDTQLLTGFNGRASIASNSNYWAAIGK EEEEEECCCHHHHHEEEECCCCCCEEEEEECCCCEEEECCCCCEEEECCCCEEEEECC >Mature Secondary Structure MDRINTASKAVDLFGAGKHGWKNANLGLGVTPTDFNAEFCNGVQEEILAIIEAGGQVPAI CCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCEE ATRNQMLLALRAAGVFTTPAQFDNTTKAATTAFVQRALGNYQDAISVAANTVLTAADFGK ECCCEEEEEEEECCCEECCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHEEEECCCCC VIFVDASGGPRTITLPLVTQSGAALKIYKSDSSANAVTVVTSGSNVIVGTNNFAGGTSSS EEEEECCCCCEEEEEEEEECCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCCCCCCC SVILRTVGDFLDLCATGGGSYYGLSSGGAASVAASGYQKLPSGLIIQWGVFTGNATPGNP CCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCC VAVTFPLTFPTALYSLTFGSAGGTTATCAAWSDTQLLTGFNGRASIASNSNYWAAIGK EEEEEECCCHHHHHEEEECCCCCCEEEEEECCCCEEEECCCCCEEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA