Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is rbr [H]

Identifier: 91789562

GI number: 91789562

Start: 3922608

End: 3923030

Strand: Reverse

Name: rbr [H]

Synonym: Bpro_3716

Alternate gene names: 91789562

Gene position: 3923030-3922608 (Counterclockwise)

Preceding gene: 91789568

Following gene: 91789561

Centisome position: 75.44

GC content: 61.47

Gene sequence:

>423_bases
ATGGCTGCTCTTAAAGGCTCCAGGACGGAAGAGAACCTGAAAGCCGCGTTTGCCGGCGAATCACAGGCCAACCGCCGCTA
TCTGTATTTCGCAAACAAGGCCGACGTCGAAGGCCAGAACGATGTGTCAGCACTGTTCCGCTCGACTGCAGAAGGTGAAA
CCGGCCACGCCCACGGCCACCTGGAATGGCTGGAACAGTGCGGCGACCCCGCCACCGGCATGCCCTTCGGCGCCACCCGC
GACAACCTCAAATCTGCCATAGCAGGCGAAACCCACGAGTACACCGACATGTATCCGGGCATGGCCAAAACCGCGCGCGA
CGAAGGTCACGACGAAGTAGCGGACTGGTTTGAAACCCTGGCCAAGGCCGAGCGTTCGCATGCGAACCGCTACACCAAGG
CCCTGGCCGAGCTGGTGGACTGA

Upstream 100 bases:

>100_bases
CTGGACGCGTCACGCCAACAGCGCTAAGGTGGAACCGTCTTCGGCTGGCTTTGCCCGAGGCCCCAAGCAAGGTATTCATC
AACCCACGAAGGAGATTTCC

Downstream 100 bases:

>100_bases
CCAGCGCGCCGGCCCTGCCGGCGCTGGAACGGCTGCAAGGCGGCGTCGTCTCGGGTAGCACACCCGGGCGACGGCGTCCC
GTCCCATGCCTGCTGCTCGC

Product: rubrerythrin

Products: NA

Alternate protein names: RR [H]

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MAALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGHLEWLEQCGDPATGMPFGATR
DNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETLAKAERSHANRYTKALAELVD

Sequences:

>Translated_140_residues
MAALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGHLEWLEQCGDPATGMPFGATR
DNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETLAKAERSHANRYTKALAELVD
>Mature_139_residues
AALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGHLEWLEQCGDPATGMPFGATRD
NLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETLAKAERSHANRYTKALAELVD

Specific function: May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide [H]

COG id: COG1592

COG function: function code C; Rubrerythrin

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rubredoxin-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009040
- InterPro:   IPR012347
- InterPro:   IPR009078
- InterPro:   IPR004039
- InterPro:   IPR003251 [H]

Pfam domain/function: PF02915 Rubrerythrin [H]

EC number: NA

Molecular weight: Translated: 15367; Mature: 15236

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50905 FERRITIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGH
CCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHH
LEWLEQCGDPATGMPFGATRDNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETL
HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHH
AKAERSHANRYTKALAELVD
HHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
AALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGH
CCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHH
LEWLEQCGDPATGMPFGATRDNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETL
HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHH
AKAERSHANRYTKALAELVD
HHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11972784; 12949112 [H]