| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is rbr [H]
Identifier: 91789562
GI number: 91789562
Start: 3922608
End: 3923030
Strand: Reverse
Name: rbr [H]
Synonym: Bpro_3716
Alternate gene names: 91789562
Gene position: 3923030-3922608 (Counterclockwise)
Preceding gene: 91789568
Following gene: 91789561
Centisome position: 75.44
GC content: 61.47
Gene sequence:
>423_bases ATGGCTGCTCTTAAAGGCTCCAGGACGGAAGAGAACCTGAAAGCCGCGTTTGCCGGCGAATCACAGGCCAACCGCCGCTA TCTGTATTTCGCAAACAAGGCCGACGTCGAAGGCCAGAACGATGTGTCAGCACTGTTCCGCTCGACTGCAGAAGGTGAAA CCGGCCACGCCCACGGCCACCTGGAATGGCTGGAACAGTGCGGCGACCCCGCCACCGGCATGCCCTTCGGCGCCACCCGC GACAACCTCAAATCTGCCATAGCAGGCGAAACCCACGAGTACACCGACATGTATCCGGGCATGGCCAAAACCGCGCGCGA CGAAGGTCACGACGAAGTAGCGGACTGGTTTGAAACCCTGGCCAAGGCCGAGCGTTCGCATGCGAACCGCTACACCAAGG CCCTGGCCGAGCTGGTGGACTGA
Upstream 100 bases:
>100_bases CTGGACGCGTCACGCCAACAGCGCTAAGGTGGAACCGTCTTCGGCTGGCTTTGCCCGAGGCCCCAAGCAAGGTATTCATC AACCCACGAAGGAGATTTCC
Downstream 100 bases:
>100_bases CCAGCGCGCCGGCCCTGCCGGCGCTGGAACGGCTGCAAGGCGGCGTCGTCTCGGGTAGCACACCCGGGCGACGGCGTCCC GTCCCATGCCTGCTGCTCGC
Product: rubrerythrin
Products: NA
Alternate protein names: RR [H]
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MAALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGHLEWLEQCGDPATGMPFGATR DNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETLAKAERSHANRYTKALAELVD
Sequences:
>Translated_140_residues MAALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGHLEWLEQCGDPATGMPFGATR DNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETLAKAERSHANRYTKALAELVD >Mature_139_residues AALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGHLEWLEQCGDPATGMPFGATRD NLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETLAKAERSHANRYTKALAELVD
Specific function: May provide oxidative stress protection via catalytic reduction of intracellular hydrogen peroxide [H]
COG id: COG1592
COG function: function code C; Rubrerythrin
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 rubredoxin-like domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009040 - InterPro: IPR012347 - InterPro: IPR009078 - InterPro: IPR004039 - InterPro: IPR003251 [H]
Pfam domain/function: PF02915 Rubrerythrin [H]
EC number: NA
Molecular weight: Translated: 15367; Mature: 15236
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS50905 FERRITIN_LIKE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGH CCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHH LEWLEQCGDPATGMPFGATRDNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETL HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHH AKAERSHANRYTKALAELVD HHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure AALKGSRTEENLKAAFAGESQANRRYLYFANKADVEGQNDVSALFRSTAEGETGHAHGH CCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHH LEWLEQCGDPATGMPFGATRDNLKSAIAGETHEYTDMYPGMAKTARDEGHDEVADWFETL HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHCCCCHHHHHHHHHHH AKAERSHANRYTKALAELVD HHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11972784; 12949112 [H]