| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is argH [H]
Identifier: 91789520
GI number: 91789520
Start: 3882530
End: 3883939
Strand: Direct
Name: argH [H]
Synonym: Bpro_3672
Alternate gene names: 91789520
Gene position: 3882530-3883939 (Clockwise)
Preceding gene: 91789515
Following gene: 91789521
Centisome position: 74.66
GC content: 63.9
Gene sequence:
>1410_bases GTGAATCAATTCGACAAAAAATCCCAAGCCTGGTCAGCCCTGTTCTCCGAGCCCATGAGCGATCTGGTCAAGCGCTACAC CGCCAGCGTGTTTTTTGACAAGCGCCTCTGGCAGGCTGACATCACCGGCTCGCTGGCCCACGCCGACATGCTGGCCGCGC AAAAGGTCATCGCCCCCAGCGACCTCGCGGCCATCCAGAACGGCATGGCGCAAATCACCGCCGAAATCGAGGCGGGCACG TTTGAATGGAAACTGGACCTCGAGGATGTGCACCTCAACATCGAGGCGCGCCTGACCCAGCTGGTGGGCGATGCCGGCAA GCGCCTGCACACCGGCCGCAGCCGCAACGACCAGGTCGCCACCGACGTGCGCCTGTGGCTGCGCGGCGAAATTGACCTCA TTGGCGGCCTGCTCGGTGACCTGCAAAAGGCACTGGTTGACATCGCCGAGAAAAACGTCGACGTGATCCTGCCCGGCTTC ACCCACCTGCAGGTGGCGCAGCCTGTGAGCTTTGGCCACCACATGCTGGCCTATGTGGAAATGTTTGCGCGGGACGCCGA ACGCATGGCCGAGATCCGCCAGCGTGTCAACCGGCTGCCGCTGGGCGCTGCCGCCCTGGCCGGCACCAGCTACCCGCTGG ACCGCGAGCGCGTGGCCAAAACCCTGGGCATGGTGGACGAGCAGGGCCGCGCCTGCGTCTGCCAGAACAGCCTGGACGCC GTGAGCGACCGCGACTTTGCCATTGAATTCACCGCTGCCGCCACGCTGGCCATGGTGCACATCAGCCGCATGAGCGAGGA ACTGGTGCTGTGGATGAGCCAGAGCTTCGGTTTTATCGACATTGCCGACCGTTTCTGCACCGGCAGCTCCATCATGCCGC AGAAGAAAAACCCCGACGTGCCCGAGCTGGCGCGCGGCAAGACCGGCCGCGTGGTTGGCCACCTGATGGGCCTGATCACT TTGATGAAAGGCCAGCCGCTGGCCTACAACAAGGACAACCAGGAAGACAAGGAGCCGCTGTTTGACACGGTGGACACGCT GAAAGACACACTGCGCATCTTTGCCGAGATGGTCGGCGGCATCACCGTCAAGCCCGAAGCCATGGAGCGCGCCGCCCTCA AGGGCTACGCCACCGCCACCGATCTGGCCGACTACCTGGTGAAAAAAGGCCTGCCCTTTCGCGATGCGCATGAAACGGTG GCGCATGCCGTCAAGGCCGCCATCTCGCATGCGGTGGACCTGTCGGAGTTGCCGCTGGCGGTGCTGCAGCAGTTCAACCC GAGCATCGAAAAAGACGTTTACGATGCCTTAAGCCTGCGCGGCTCGCTCAATGCCCGCAACATCCTGGGCGGCACCGCCC CGGCCCAGGTGCGGGCGCAGATTGCAAGGCACCGCGCCCGGCTGGGTTAA
Upstream 100 bases:
>100_bases ATACCTGCGAATACCTGCCCAGAATAGCGCACCTGGCGCCCTAACCCATGGCGCGCGGCCTCGCAGCCCTGCCGCGCAAC CGCCCGAAAGAAAGCCCGAC
Downstream 100 bases:
>100_bases GAAGTTATCCGTAAATAGTACACTCTCGTCCTGAGCCGTACTTCACACGGCGTCGGGGCGAATGTATGGCGACACGCAAG CGAGTCGAATCGTGGGTGGT
Product: argininosuccinate lyase
Products: NA
Alternate protein names: ASAL; Arginosuccinase [H]
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MNQFDKKSQAWSALFSEPMSDLVKRYTASVFFDKRLWQADITGSLAHADMLAAQKVIAPSDLAAIQNGMAQITAEIEAGT FEWKLDLEDVHLNIEARLTQLVGDAGKRLHTGRSRNDQVATDVRLWLRGEIDLIGGLLGDLQKALVDIAEKNVDVILPGF THLQVAQPVSFGHHMLAYVEMFARDAERMAEIRQRVNRLPLGAAALAGTSYPLDRERVAKTLGMVDEQGRACVCQNSLDA VSDRDFAIEFTAAATLAMVHISRMSEELVLWMSQSFGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVVGHLMGLIT LMKGQPLAYNKDNQEDKEPLFDTVDTLKDTLRIFAEMVGGITVKPEAMERAALKGYATATDLADYLVKKGLPFRDAHETV AHAVKAAISHAVDLSELPLAVLQQFNPSIEKDVYDALSLRGSLNARNILGGTAPAQVRAQIARHRARLG
Sequences:
>Translated_469_residues MNQFDKKSQAWSALFSEPMSDLVKRYTASVFFDKRLWQADITGSLAHADMLAAQKVIAPSDLAAIQNGMAQITAEIEAGT FEWKLDLEDVHLNIEARLTQLVGDAGKRLHTGRSRNDQVATDVRLWLRGEIDLIGGLLGDLQKALVDIAEKNVDVILPGF THLQVAQPVSFGHHMLAYVEMFARDAERMAEIRQRVNRLPLGAAALAGTSYPLDRERVAKTLGMVDEQGRACVCQNSLDA VSDRDFAIEFTAAATLAMVHISRMSEELVLWMSQSFGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVVGHLMGLIT LMKGQPLAYNKDNQEDKEPLFDTVDTLKDTLRIFAEMVGGITVKPEAMERAALKGYATATDLADYLVKKGLPFRDAHETV AHAVKAAISHAVDLSELPLAVLQQFNPSIEKDVYDALSLRGSLNARNILGGTAPAQVRAQIARHRARLG >Mature_469_residues MNQFDKKSQAWSALFSEPMSDLVKRYTASVFFDKRLWQADITGSLAHADMLAAQKVIAPSDLAAIQNGMAQITAEIEAGT FEWKLDLEDVHLNIEARLTQLVGDAGKRLHTGRSRNDQVATDVRLWLRGEIDLIGGLLGDLQKALVDIAEKNVDVILPGF THLQVAQPVSFGHHMLAYVEMFARDAERMAEIRQRVNRLPLGAAALAGTSYPLDRERVAKTLGMVDEQGRACVCQNSLDA VSDRDFAIEFTAAATLAMVHISRMSEELVLWMSQSFGFIDIADRFCTGSSIMPQKKNPDVPELARGKTGRVVGHLMGLIT LMKGQPLAYNKDNQEDKEPLFDTVDTLKDTLRIFAEMVGGITVKPEAMERAALKGYATATDLADYLVKKGLPFRDAHETV AHAVKAAISHAVDLSELPLAVLQQFNPSIEKDVYDALSLRGSLNARNILGGTAPAQVRAQIARHRARLG
Specific function: Arginine biosynthesis; eighth (last) step. [C]
COG id: COG0165
COG function: function code E; Argininosuccinate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lyase 1 family. Argininosuccinate lyase subfamily [H]
Homologues:
Organism=Homo sapiens, GI31541964, Length=458, Percent_Identity=41.0480349344978, Blast_Score=362, Evalue=1e-100, Organism=Homo sapiens, GI68303542, Length=458, Percent_Identity=41.0480349344978, Blast_Score=362, Evalue=1e-100, Organism=Homo sapiens, GI68303547, Length=458, Percent_Identity=38.8646288209607, Blast_Score=331, Evalue=7e-91, Organism=Homo sapiens, GI68303549, Length=458, Percent_Identity=38.4279475982533, Blast_Score=321, Evalue=1e-87, Organism=Escherichia coli, GI1790398, Length=460, Percent_Identity=46.304347826087, Blast_Score=405, Evalue=1e-114, Organism=Saccharomyces cerevisiae, GI6321806, Length=473, Percent_Identity=40.3805496828753, Blast_Score=343, Evalue=4e-95, Organism=Drosophila melanogaster, GI221473854, Length=453, Percent_Identity=37.9690949227373, Blast_Score=313, Evalue=1e-85, Organism=Drosophila melanogaster, GI78706858, Length=453, Percent_Identity=37.9690949227373, Blast_Score=313, Evalue=1e-85,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009049 - InterPro: IPR003031 - InterPro: IPR000362 - InterPro: IPR020557 - InterPro: IPR008948 - InterPro: IPR022761 [H]
Pfam domain/function: PF00206 Lyase_1 [H]
EC number: =4.3.2.1 [H]
Molecular weight: Translated: 51514; Mature: 51514
Theoretical pI: Translated: 6.39; Mature: 6.39
Prosite motif: PS00163 FUMARATE_LYASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQFDKKSQAWSALFSEPMSDLVKRYTASVFFDKRLWQADITGSLAHADMLAAQKVIAPS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH DLAAIQNGMAQITAEIEAGTFEWKLDLEDVHLNIEARLTQLVGDAGKRLHTGRSRNDQVA HHHHHHCCHHHEEEEEECCEEEEEEEHHHEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHH TDVRLWLRGEIDLIGGLLGDLQKALVDIAEKNVDVILPGFTHLQVAQPVSFGHHMLAYVE HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCHHHHHHHHHHHH MFARDAERMAEIRQRVNRLPLGAAALAGTSYPLDRERVAKTLGMVDEQGRACVCQNSLDA HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCHHH VSDRDFAIEFTAAATLAMVHISRMSEELVLWMSQSFGFIDIADRFCTGSSIMPQKKNPDV CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCCCC PELARGKTGRVVGHLMGLITLMKGQPLAYNKDNQEDKEPLFDTVDTLKDTLRIFAEMVGG CHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC ITVKPEAMERAALKGYATATDLADYLVKKGLPFRDAHETVAHAVKAAISHAVDLSELPLA EECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH VLQQFNPSIEKDVYDALSLRGSLNARNILGGTAPAQVRAQIARHRARLG HHHHCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MNQFDKKSQAWSALFSEPMSDLVKRYTASVFFDKRLWQADITGSLAHADMLAAQKVIAPS CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH DLAAIQNGMAQITAEIEAGTFEWKLDLEDVHLNIEARLTQLVGDAGKRLHTGRSRNDQVA HHHHHHCCHHHEEEEEECCEEEEEEEHHHEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHH TDVRLWLRGEIDLIGGLLGDLQKALVDIAEKNVDVILPGFTHLQVAQPVSFGHHMLAYVE HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCHHHHHHHHHHHH MFARDAERMAEIRQRVNRLPLGAAALAGTSYPLDRERVAKTLGMVDEQGRACVCQNSLDA HHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCHHH VSDRDFAIEFTAAATLAMVHISRMSEELVLWMSQSFGFIDIADRFCTGSSIMPQKKNPDV CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCCCCCCCCCCCCCC PELARGKTGRVVGHLMGLITLMKGQPLAYNKDNQEDKEPLFDTVDTLKDTLRIFAEMVGG CHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC ITVKPEAMERAALKGYATATDLADYLVKKGLPFRDAHETVAHAVKAAISHAVDLSELPLA EECCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH VLQQFNPSIEKDVYDALSLRGSLNARNILGGTAPAQVRAQIARHRARLG HHHHCCCCHHHHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA