| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91789464
Identifier: 91789464
GI number: 91789464
Start: 3814589
End: 3817258
Strand: Direct
Name: 91789464
Synonym: Bpro_3613
Alternate gene names: NA
Gene position: 3814589-3817258 (Clockwise)
Preceding gene: 91789463
Following gene: 91789465
Centisome position: 73.35
GC content: 66.44
Gene sequence:
>2670_bases ATGAATCATCGTGGTCGTTGGCGTATTGGTGCTCTGGCGAGCGCTATTGCATTGCTGGGTAGCCTGGCAAGTCTGGAAGC ACATGCCCTGGCGTTGGGCCGAATAACGGTTCAATCGGCGCTGGGGGAACCCCTTCGCGCAGAAATCGACATTGCAGACA TCACTGCAGACGAGGCCTCCAGCCTAAAGGCCGGCGTCGCATCTGCCGACACCTTCAAGGCAGCGGGGCTTGAGTACACC GCCGCGCTGTCGGGCCTGCAGATTAACCTGCAACGCCGCACCGATGGCCGGGCTTATTTGCGCCTGACCAGCAGCCGACC CGTGAACGAGCCCTTTGTCGACCTGATTCTGGAAGCCAGCTGGGCATCCGGGCGGATCACCCGCGACTACACCATGCTGT TTGACCCGCCCAACCTGCGGTCCGCAGGCCCGGCTGTAGCGCCAACCGCGCCCCAATTGTCACGGCCAGTCCCGCCCACC GCCGCAGCGCCAGCCAGGACGGCGACGCCTGCACCTTCCACACCGCCAGCCCCACCCGTGGCCAAAGCCGCGCCGGCTGA CAAGGCCCCCGCGAGCGACAAACAGCTCACGGTCAAGACCGGAGACACCGCAGGGCGAATCGCAGCGGAGAACAAGCCGG CCAGCGTGTCGCTGGACCAGATGCTGGTGGCCTTGCTCAGGAGCAATCCAAACGCATTTATTGGCGGCAACGTCAACCGG CTCAAATCCGGCGCCGTGCTGGAAATGCCCAGCGACGAAGCTGCCAGCGCCATCCCTCCCCGCGAAGCCACGCAAACCAT CGTGGCCCAAAGCAGGGATTTCAATAACTTCCGGCGCAAGCTCGCCGAAAGCGTGCCAGCCGCTCAGGTGGCCAGCGCGG ACCGGCAGGCTGGCGGAAAAGTGCAGGCCAAGGTCGAGGATCGCACCCCGGCAAACACCACCCCCGACAAGTTGACGCTG TCCAAAGGTGCGGTTCAGGGCAAAGCAGCAACCGAAGACAAGATTGCCAAAGACAGGCAAGCCCAGGATGCCTCTGCCCG CGTGGCGGAGCTGTCAAAAAACATCAGCGATCTCAACAAGCTGGGTGTTGCCCCCGCTCCGGTGGCAACCGCCAGCGCCG CCAAGGCGCCCGGCGTCGCCTTACCCGCACCGTCGGGCCTTGCGGCACCGGCACCTGCACCTGTGCCCCCTGCGGCTGCA GCGGCCAATTCAGCCCAGCCTGGCACCGCCGGCAGCCCCGTATCAACACCAGCGGCTCCAGCCTCTGCAGCCATCGCGGT CCCGGCCATCCCCGCTGCCAGTGCAGCCGCGGCGGCGCCTATCGCCCCGGCCTCTGCAGCCGATGCATCGCCCCCGGTCG CCGCAGCTGTCCCCCCCAAGAAACCCGTGGTGGTCGCTCCTCCACCCCCGGAACCCAGTCTGATGGACGGTTTGCTGGAG AACCCGCTGACCCTGCCGCTGGCCGGTGGCTTGCTGGCCCTGCTGGCCGGTTTCGGTTTTTACCGCTACCGCCAGCGCAG CAACCCGGCGCAGGTGGACAGTTCCTTCCTCGAGAGCCGCCTGCAGCCCGACTCCTTTTTCGGCGCCAGCGGTGGCCAGC GCATCGATACCAACGAGGGAAACGCCACAGGCTCGTCCCTCGTTTACTCGCCCAGCCAGCTCGATGCCGCCGGCGATGTG GACCCGGTGGCCGAGGCCGATGTCTACCTGGCCTATGGGCGCGACTTGCAGGCTGAGGAAATCCTCAAGGAAGCCATGCG CACCAGCCCGACCCGCGTGGCCATCCATGCCAAACTGATGGAAATTTATGCCAAGCGTCGCGACACCAAGGCCTTCGAGG CGGTGGCGGTCGAGGCCTTTAACCTGACGCAGGGCAGTGGCCCGGACTGGGCGTATATCAGCGAAATGGGCCGTGAACTC GACCCGGCCAACCCGATGTACCAGCCCGGTGGACAACCCGTGGCCGCGGGCAAGGGCGGCGGCGCAGCCGCTTTCAGTGC GGCCTCCGCCACAGTCGCCAGAAATGCCCCGCCAGCGCATGCCGCCCCCGTGGCGCCAGTGGTGGATGTCGACCTCGATC TGGATTTCTCGCTGGGCGATGCGGAAGACGCGGCGACCATCCCCGTCGCCCCGCCCACCCCGCCCGTGCGATCAGCGCCC CCTCGGCCGCCTGAGCCGCCTGTCGCCGCGAAACCCGCACCGGCACCGGCCCTGGCTGACCTGGACATGGATTTCGGCAG CGCGACCGTCTCGCTGCCCGAGATAGCGACCCCTGCACCGGCATCAAAGCCTGCTGCAGCACCGGCCATCGAAATGGATT TCCCCTCCGCAGGGCTGAACTTCACACCCGAGCCCACTGCCTCATCGAAGCCGGTCCTGGCCACCAGGGCCGCCACCGCA CCTGCGCCGGCGTCCTCCGACAGTGGCATGCTGGAGTTTGACCTCGGCTCACTGTCGCTGGACCTGGACGACGGCCCTGC AACTGAAAGCCCGGTGCATGCCCAAGCAGCCACGTCCAGCGACCCGCTGGAAACCAAATTCCAGCTGGCTGAAGAATTCC GTTCCCTGGGCGACCCGGACGGCGCAAGGTCTCTGGCCGAAGAAGTGCTGGCAGAAGCCAAAGGGCCGCTGAAGGTCAAA GCGCAGGCGTTCCTCAACGCCCTCGCGTGA
Upstream 100 bases:
>100_bases TTGATGTTATGGTTGTTTTTCGAAAATTCGCATTGAGGTTTTTGTGCGCCTAAGCAGAATAAAGTTACATGCAAACCCAG CAATCGAGGATCAAAAACCC
Downstream 100 bases:
>100_bases TTCCGGGGTGGTATTGCAAGCCGGCCTGAACGCCGCGCGTTCACTGGCCGTGAAGGTTTCCCCGTGAGGATTGCGCTCGG TATCAGCTACAGCGGCAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: FimV Protein; Tfp Pilus Assembly Protein FimV-Like Protein; FimV N-Terminal Domain Protein; Type 4 Pilus Biogenesis; LysM Domain Protein; Lysm Domain; Transmembrane Tfp Pilus Assembly FimV Protein; TPR Repeat-Containing Protein; FimV C-Terminal Domain-Containing Protein; Protein Containing Tetratricopeptide Repeats; Tfp Pilus Assembly Protein FimV; LysM Domain-Containing Protein; LysM Domain-Containing; Tfp Pilus Assembly Protein FimV-Like; Transmembrane Tfp Pilus Assembly Protein FimV; FimV N-Terminal Domain; FimV N-Terminal Domain-Containing Protein; FimV Type IV Pilus Assembly Protein
Number of amino acids: Translated: 889; Mature: 889
Protein sequence:
>889_residues MNHRGRWRIGALASAIALLGSLASLEAHALALGRITVQSALGEPLRAEIDIADITADEASSLKAGVASADTFKAAGLEYT AALSGLQINLQRRTDGRAYLRLTSSRPVNEPFVDLILEASWASGRITRDYTMLFDPPNLRSAGPAVAPTAPQLSRPVPPT AAAPARTATPAPSTPPAPPVAKAAPADKAPASDKQLTVKTGDTAGRIAAENKPASVSLDQMLVALLRSNPNAFIGGNVNR LKSGAVLEMPSDEAASAIPPREATQTIVAQSRDFNNFRRKLAESVPAAQVASADRQAGGKVQAKVEDRTPANTTPDKLTL SKGAVQGKAATEDKIAKDRQAQDASARVAELSKNISDLNKLGVAPAPVATASAAKAPGVALPAPSGLAAPAPAPVPPAAA AANSAQPGTAGSPVSTPAAPASAAIAVPAIPAASAAAAAPIAPASAADASPPVAAAVPPKKPVVVAPPPPEPSLMDGLLE NPLTLPLAGGLLALLAGFGFYRYRQRSNPAQVDSSFLESRLQPDSFFGASGGQRIDTNEGNATGSSLVYSPSQLDAAGDV DPVAEADVYLAYGRDLQAEEILKEAMRTSPTRVAIHAKLMEIYAKRRDTKAFEAVAVEAFNLTQGSGPDWAYISEMGREL DPANPMYQPGGQPVAAGKGGGAAAFSAASATVARNAPPAHAAPVAPVVDVDLDLDFSLGDAEDAATIPVAPPTPPVRSAP PRPPEPPVAAKPAPAPALADLDMDFGSATVSLPEIATPAPASKPAAAPAIEMDFPSAGLNFTPEPTASSKPVLATRAATA PAPASSDSGMLEFDLGSLSLDLDDGPATESPVHAQAATSSDPLETKFQLAEEFRSLGDPDGARSLAEEVLAEAKGPLKVK AQAFLNALA
Sequences:
>Translated_889_residues MNHRGRWRIGALASAIALLGSLASLEAHALALGRITVQSALGEPLRAEIDIADITADEASSLKAGVASADTFKAAGLEYT AALSGLQINLQRRTDGRAYLRLTSSRPVNEPFVDLILEASWASGRITRDYTMLFDPPNLRSAGPAVAPTAPQLSRPVPPT AAAPARTATPAPSTPPAPPVAKAAPADKAPASDKQLTVKTGDTAGRIAAENKPASVSLDQMLVALLRSNPNAFIGGNVNR LKSGAVLEMPSDEAASAIPPREATQTIVAQSRDFNNFRRKLAESVPAAQVASADRQAGGKVQAKVEDRTPANTTPDKLTL SKGAVQGKAATEDKIAKDRQAQDASARVAELSKNISDLNKLGVAPAPVATASAAKAPGVALPAPSGLAAPAPAPVPPAAA AANSAQPGTAGSPVSTPAAPASAAIAVPAIPAASAAAAAPIAPASAADASPPVAAAVPPKKPVVVAPPPPEPSLMDGLLE NPLTLPLAGGLLALLAGFGFYRYRQRSNPAQVDSSFLESRLQPDSFFGASGGQRIDTNEGNATGSSLVYSPSQLDAAGDV DPVAEADVYLAYGRDLQAEEILKEAMRTSPTRVAIHAKLMEIYAKRRDTKAFEAVAVEAFNLTQGSGPDWAYISEMGREL DPANPMYQPGGQPVAAGKGGGAAAFSAASATVARNAPPAHAAPVAPVVDVDLDLDFSLGDAEDAATIPVAPPTPPVRSAP PRPPEPPVAAKPAPAPALADLDMDFGSATVSLPEIATPAPASKPAAAPAIEMDFPSAGLNFTPEPTASSKPVLATRAATA PAPASSDSGMLEFDLGSLSLDLDDGPATESPVHAQAATSSDPLETKFQLAEEFRSLGDPDGARSLAEEVLAEAKGPLKVK AQAFLNALA >Mature_889_residues MNHRGRWRIGALASAIALLGSLASLEAHALALGRITVQSALGEPLRAEIDIADITADEASSLKAGVASADTFKAAGLEYT AALSGLQINLQRRTDGRAYLRLTSSRPVNEPFVDLILEASWASGRITRDYTMLFDPPNLRSAGPAVAPTAPQLSRPVPPT AAAPARTATPAPSTPPAPPVAKAAPADKAPASDKQLTVKTGDTAGRIAAENKPASVSLDQMLVALLRSNPNAFIGGNVNR LKSGAVLEMPSDEAASAIPPREATQTIVAQSRDFNNFRRKLAESVPAAQVASADRQAGGKVQAKVEDRTPANTTPDKLTL SKGAVQGKAATEDKIAKDRQAQDASARVAELSKNISDLNKLGVAPAPVATASAAKAPGVALPAPSGLAAPAPAPVPPAAA AANSAQPGTAGSPVSTPAAPASAAIAVPAIPAASAAAAAPIAPASAADASPPVAAAVPPKKPVVVAPPPPEPSLMDGLLE NPLTLPLAGGLLALLAGFGFYRYRQRSNPAQVDSSFLESRLQPDSFFGASGGQRIDTNEGNATGSSLVYSPSQLDAAGDV DPVAEADVYLAYGRDLQAEEILKEAMRTSPTRVAIHAKLMEIYAKRRDTKAFEAVAVEAFNLTQGSGPDWAYISEMGREL DPANPMYQPGGQPVAAGKGGGAAAFSAASATVARNAPPAHAAPVAPVVDVDLDLDFSLGDAEDAATIPVAPPTPPVRSAP PRPPEPPVAAKPAPAPALADLDMDFGSATVSLPEIATPAPASKPAAAPAIEMDFPSAGLNFTPEPTASSKPVLATRAATA PAPASSDSGMLEFDLGSLSLDLDDGPATESPVHAQAATSSDPLETKFQLAEEFRSLGDPDGARSLAEEVLAEAKGPLKVK AQAFLNALA
Specific function: Unknown
COG id: COG3170
COG function: function code NU; Tfp pilus assembly protein FimV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90257; Mature: 90257
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHRGRWRIGALASAIALLGSLASLEAHALALGRITVQSALGEPLRAEIDIADITADEAS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHH SLKAGVASADTFKAAGLEYTAALSGLQINLQRRTDGRAYLRLTSSRPVNEPFVDLILEAS HHHHCCCCCCHHHHCCCCHHHHHCCEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHCC WASGRITRDYTMLFDPPNLRSAGPAVAPTAPQLSRPVPPTAAAPARTATPAPSTPPAPPV CCCCCEEECEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC AKAAPADKAPASDKQLTVKTGDTAGRIAAENKPASVSLDQMLVALLRSNPNAFIGGNVNR CCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHH LKSGAVLEMPSDEAASAIPPREATQTIVAQSRDFNNFRRKLAESVPAAQVASADRQAGGK HCCCCEEECCCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCE VQAKVEDRTPANTTPDKLTLSKGAVQGKAATEDKIAKDRQAQDASARVAELSKNISDLNK EEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGVAPAPVATASAAKAPGVALPAPSGLAAPAPAPVPPAAAAANSAQPGTAGSPVSTPAAP HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC ASAAIAVPAIPAASAAAAAPIAPASAADASPPVAAAVPPKKPVVVAPPPPEPSLMDGLLE CCCEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCHHHHHHHHC NPLTLPLAGGLLALLAGFGFYRYRQRSNPAQVDSSFLESRLQPDSFFGASGGQRIDTNEG CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCC NATGSSLVYSPSQLDAAGDVDPVAEADVYLAYGRDLQAEEILKEAMRTSPTRVAIHAKLM CCCCCEEEECCHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHH EIYAKRRDTKAFEAVAVEAFNLTQGSGPDWAYISEMGRELDPANPMYQPGGQPVAAGKGG HHHHHHCCCHHHHHHEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC GAAAFSAASATVARNAPPAHAAPVAPVVDVDLDLDFSLGDAEDAATIPVAPPTPPVRSAP CHHHHHHHHHHHHCCCCCCCCCCCCCEEEECEECCCCCCCCCCCCEECCCCCCCCCCCCC PRPPEPPVAAKPAPAPALADLDMDFGSATVSLPEIATPAPASKPAAAPAIEMDFPSAGLN CCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC FTPEPTASSKPVLATRAATAPAPASSDSGMLEFDLGSLSLDLDDGPATESPVHAQAATSS CCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHHCCCCC DPLETKFQLAEEFRSLGDPDGARSLAEEVLAEAKGPLKVKAQAFLNALA CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCC >Mature Secondary Structure MNHRGRWRIGALASAIALLGSLASLEAHALALGRITVQSALGEPLRAEIDIADITADEAS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHH SLKAGVASADTFKAAGLEYTAALSGLQINLQRRTDGRAYLRLTSSRPVNEPFVDLILEAS HHHHCCCCCCHHHHCCCCHHHHHCCEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHCC WASGRITRDYTMLFDPPNLRSAGPAVAPTAPQLSRPVPPTAAAPARTATPAPSTPPAPPV CCCCCEEECEEEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC AKAAPADKAPASDKQLTVKTGDTAGRIAAENKPASVSLDQMLVALLRSNPNAFIGGNVNR CCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEECCCHHH LKSGAVLEMPSDEAASAIPPREATQTIVAQSRDFNNFRRKLAESVPAAQVASADRQAGGK HCCCCEEECCCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCE VQAKVEDRTPANTTPDKLTLSKGAVQGKAATEDKIAKDRQAQDASARVAELSKNISDLNK EEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGVAPAPVATASAAKAPGVALPAPSGLAAPAPAPVPPAAAAANSAQPGTAGSPVSTPAAP HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCC ASAAIAVPAIPAASAAAAAPIAPASAADASPPVAAAVPPKKPVVVAPPPPEPSLMDGLLE CCCEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCCCHHHHHHHHC NPLTLPLAGGLLALLAGFGFYRYRQRSNPAQVDSSFLESRLQPDSFFGASGGQRIDTNEG CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCC NATGSSLVYSPSQLDAAGDVDPVAEADVYLAYGRDLQAEEILKEAMRTSPTRVAIHAKLM CCCCCEEEECCHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHH EIYAKRRDTKAFEAVAVEAFNLTQGSGPDWAYISEMGRELDPANPMYQPGGQPVAAGKGG HHHHHHCCCHHHHHHEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCC GAAAFSAASATVARNAPPAHAAPVAPVVDVDLDLDFSLGDAEDAATIPVAPPTPPVRSAP CHHHHHHHHHHHHCCCCCCCCCCCCCEEEECEECCCCCCCCCCCCEECCCCCCCCCCCCC PRPPEPPVAAKPAPAPALADLDMDFGSATVSLPEIATPAPASKPAAAPAIEMDFPSAGLN CCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC FTPEPTASSKPVLATRAATAPAPASSDSGMLEFDLGSLSLDLDDGPATESPVHAQAATSS CCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCHHCCCCC DPLETKFQLAEEFRSLGDPDGARSLAEEVLAEAKGPLKVKAQAFLNALA CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA