| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91789445
Identifier: 91789445
GI number: 91789445
Start: 3794624
End: 3795427
Strand: Direct
Name: 91789445
Synonym: Bpro_3594
Alternate gene names: NA
Gene position: 3794624-3795427 (Clockwise)
Preceding gene: 91789441
Following gene: 91789450
Centisome position: 72.97
GC content: 64.3
Gene sequence:
>804_bases ATGAACACAAGCACCCCCCAACCGTTTGGCGATCACCTGCGCCACTGGCGCCGGCACCGCCGCCTGAGCCAGCTGGACCT GGCCCATGAGGCGGAGATTTCGACCCGGCACCTGAGTTTTGTGGAAACCGGCCGATCCGTGCCCAGCCGTGAAATGGTGT TGCGCCTTTCAGAGCGCCTGGACATTCCGCTGCGCGAGCGCAATGCCCTGCTGGTGGCGGCGGGCTATGCACCGATGTAC CGTGAACGGCCACTCCATGATCCGGCGCTGGACTCGGCCCGGCAGGCGGTGGAACTGCTGCTGAAAAGCCACGAGCCCTA CCCCGCGCTGGCAATCGACCGGCACTGGAACCTGGTCGCCGCCAACCGCATGGTGCCGCACCTGATGGCCGGGGCCGATG CGTCGCTGCTACAAGCGCCCGTGAATGTGCTGCGCCTGAGCCTGCACCCGCTGGGGCTGGCCCCCAAAATTGCCAACCTG GCGCAGTGGCGCGCCCACCTGTTCGAACGCCTGCGCCAGCAAATCACGGCAACGGCCGACCCGGTGCTGGTGGCTTTGCG GGAAGAGCTGAAGGCCTACCCCGAGCCTGAAGATGCCGCCAGCCTGCACCTGGACGGCGAGCACGCGGGTGTCGTCATGT CTTTCAAGTTCATCACACCGGCAGGCGTGCTCAGCTTCATCAGCACCACCACCATCTTCGGCTCACCGGTTGATGTCACG TTGCAGGAACTGGCGATGGAAACATTCTTTCCGGCGGATGACTTCACCAGGAAAACCCTGCAGACATTGATGCCGCAGAC TTGA
Upstream 100 bases:
>100_bases TCAGTGCGGCCTGGACTTGAATCATTCCAGCGGCGGCGGCGCAAGTCGATGACGTGGGAGGTAATGGAATACCGGCCGGC GGGCGCTTTAGGATGGCTCC
Downstream 100 bases:
>100_bases CGCTGCTCATTTGCTCGCCATTGAACAGCGCCCTACGCAGATAGAGTGGTAGAGCAGATAGAGCGTTGACTGCAAACACT TGAAGCAAAAAGAAAAAGCC
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator XRE Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Helix-Turn-Helix Transcriptional Regulatory Protein; Xin-Antitoxin System Antitoxin Component Xre Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator XRE Family Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Xre Family
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MNTSTPQPFGDHLRHWRRHRRLSQLDLAHEAEISTRHLSFVETGRSVPSREMVLRLSERLDIPLRERNALLVAAGYAPMY RERPLHDPALDSARQAVELLLKSHEPYPALAIDRHWNLVAANRMVPHLMAGADASLLQAPVNVLRLSLHPLGLAPKIANL AQWRAHLFERLRQQITATADPVLVALREELKAYPEPEDAASLHLDGEHAGVVMSFKFITPAGVLSFISTTTIFGSPVDVT LQELAMETFFPADDFTRKTLQTLMPQT
Sequences:
>Translated_267_residues MNTSTPQPFGDHLRHWRRHRRLSQLDLAHEAEISTRHLSFVETGRSVPSREMVLRLSERLDIPLRERNALLVAAGYAPMY RERPLHDPALDSARQAVELLLKSHEPYPALAIDRHWNLVAANRMVPHLMAGADASLLQAPVNVLRLSLHPLGLAPKIANL AQWRAHLFERLRQQITATADPVLVALREELKAYPEPEDAASLHLDGEHAGVVMSFKFITPAGVLSFISTTTIFGSPVDVT LQELAMETFFPADDFTRKTLQTLMPQT >Mature_267_residues MNTSTPQPFGDHLRHWRRHRRLSQLDLAHEAEISTRHLSFVETGRSVPSREMVLRLSERLDIPLRERNALLVAAGYAPMY RERPLHDPALDSARQAVELLLKSHEPYPALAIDRHWNLVAANRMVPHLMAGADASLLQAPVNVLRLSLHPLGLAPKIANL AQWRAHLFERLRQQITATADPVLVALREELKAYPEPEDAASLHLDGEHAGVVMSFKFITPAGVLSFISTTTIFGSPVDVT LQELAMETFFPADDFTRKTLQTLMPQT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29999; Mature: 29999
Theoretical pI: Translated: 7.23; Mature: 7.23
Prosite motif: PS50943 HTH_CROC1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTSTPQPFGDHLRHWRRHRRLSQLDLAHEAEISTRHLSFVETGRSVPSREMVLRLSERL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC DIPLRERNALLVAAGYAPMYRERPLHDPALDSARQAVELLLKSHEPYPALAIDRHWNLVA CCCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEE ANRMVPHLMAGADASLLQAPVNVLRLSLHPLGLAPKIANLAQWRAHLFERLRQQITATAD HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC PVLVALREELKAYPEPEDAASLHLDGEHAGVVMSFKFITPAGVLSFISTTTIFGSPVDVT HHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHH LQELAMETFFPADDFTRKTLQTLMPQT HHHHHHHHCCCCCHHHHHHHHHHCCCC >Mature Secondary Structure MNTSTPQPFGDHLRHWRRHRRLSQLDLAHEAEISTRHLSFVETGRSVPSREMVLRLSERL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC DIPLRERNALLVAAGYAPMYRERPLHDPALDSARQAVELLLKSHEPYPALAIDRHWNLVA CCCCCCCCEEEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEE ANRMVPHLMAGADASLLQAPVNVLRLSLHPLGLAPKIANLAQWRAHLFERLRQQITATAD HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC PVLVALREELKAYPEPEDAASLHLDGEHAGVVMSFKFITPAGVLSFISTTTIFGSPVDVT HHHHHHHHHHHCCCCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHH LQELAMETFFPADDFTRKTLQTLMPQT HHHHHHHHCCCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA