| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yajR [C]
Identifier: 91789421
GI number: 91789421
Start: 3766735
End: 3767943
Strand: Direct
Name: yajR [C]
Synonym: Bpro_3567
Alternate gene names: 91789421
Gene position: 3766735-3767943 (Clockwise)
Preceding gene: 91789420
Following gene: 91789424
Centisome position: 72.43
GC content: 67.41
Gene sequence:
>1209_bases ATGGCTGATAAACCCGGCCACTCGCAGCGTCTTCCGGCGGGCATCTGGGCGCTGGGCTTTGTCAGCCTGCTCATGGACAT TTCTTCCGAGATGATCCACAGCCTGCTGCCGGTCTTCATGGTCACGGTGCTGGGCACCAGCATGTGGGCCGTCGGCCTGA TCGAGGGCTTTGCCGAAGCCACGGCGCTCATCGTCAAAGTGTTCTCGGGCGTGCTCAGCGACTACTGGGGAAAGCGCAAA CCGCTGGCGGTGCTCGGCTACGGCCTGGGTGCGCTGTCGAAACCCCTCTTTGCCCTGGCCACGACCACCGGCATGGTGCT GGCCGCCCGCCTGATCGACCGCGTCGGCAAAGGCCTGCGCGGCGCCCCGCGCGATGCACTGGTGGCCGATCTGGCGCCGC CCAGCCTGCGCGGCGCGGCGTTCGGGCTGCGCCAGTCGCTCGATACCGTGGGGGCCTTTCTCGGTCCGCTCGTCGCCATG GGCCTGATGCTGCTCTGGGCCAATGACTTTCGGGCCATTTTCTGGGTGGCCATCATTCCGGGCTTTCTGGCCGTGGCCCT GCTGCTGTTCGGCGTGCGCGAGCCCGCGACAGGCAGGCAGGCACCGCGGCTCAACCCGATCAGCAAAGACAACCTGAAGC GCCTGAGCGGACCGTACTGGCGGGTGGTTGCCATCGGCGCGGTGTTCACGCTGGCGCGCTTCAGTGAAGCGTTTTTACTG CTGCGGGCGCTGCAGGGCGGCCTGCCGGTCGCCTACACGCCGCTGGTGCTGATCGGGATGAACGTGGTCTATGCCCTGGG CGCCTACCCGTTTGGCAAGCTGTCGGACTCGGTGAGCCACACCACACTGCTGGCCTGGGGGCTGGTGGTGCTGATTGGCG CCGATGTGCTGCTGGCCTCCAGCAGCCACTGGACCTGGCCAATGGCGTGGATAGGGGCCGGCATCGCGCTGTGGGGCCTG CACATGGCCATGACCCAGGGTTTGCTGGCCACCATGGTGACCAACGCCGCACCGGCTGACCTGCGCGGCACGGCATTCGG TTTTTTCAACCTGATGAGCGGCCTGGCAATGCTGCTGGCCAGCACGCTGGCCGGGGTGCTCTGGGACCAGCTCGGCGCAC CGGTGACCTTTGCCGCTGGCGCGGCCTTCTGCCTGGTGGCGCTGGCCATGCTCTGGCGCTGGCGCGGCACCCAACTCTGG AGCACCTGA
Upstream 100 bases:
>100_bases GCGTGATTGCCCCCCGCGGCGAGGGCGCCGCCGTCATCGTCGGCTGATCCGGCTGCGATGGCTGGCCGGCAACAAGCGCT TCCGGTAAAGCCCACGGCCC
Downstream 100 bases:
>100_bases CAAAGGGAGAATGAGAGGACACGATCCTGAGGCGGTCACCGATCCCTTTGGCCGGCCGGGCGCCCCAGGTCAAGTCAGTG TTTTCCCCGCAACTGGGACA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MADKPGHSQRLPAGIWALGFVSLLMDISSEMIHSLLPVFMVTVLGTSMWAVGLIEGFAEATALIVKVFSGVLSDYWGKRK PLAVLGYGLGALSKPLFALATTTGMVLAARLIDRVGKGLRGAPRDALVADLAPPSLRGAAFGLRQSLDTVGAFLGPLVAM GLMLLWANDFRAIFWVAIIPGFLAVALLLFGVREPATGRQAPRLNPISKDNLKRLSGPYWRVVAIGAVFTLARFSEAFLL LRALQGGLPVAYTPLVLIGMNVVYALGAYPFGKLSDSVSHTTLLAWGLVVLIGADVLLASSSHWTWPMAWIGAGIALWGL HMAMTQGLLATMVTNAAPADLRGTAFGFFNLMSGLAMLLASTLAGVLWDQLGAPVTFAAGAAFCLVALAMLWRWRGTQLW ST
Sequences:
>Translated_402_residues MADKPGHSQRLPAGIWALGFVSLLMDISSEMIHSLLPVFMVTVLGTSMWAVGLIEGFAEATALIVKVFSGVLSDYWGKRK PLAVLGYGLGALSKPLFALATTTGMVLAARLIDRVGKGLRGAPRDALVADLAPPSLRGAAFGLRQSLDTVGAFLGPLVAM GLMLLWANDFRAIFWVAIIPGFLAVALLLFGVREPATGRQAPRLNPISKDNLKRLSGPYWRVVAIGAVFTLARFSEAFLL LRALQGGLPVAYTPLVLIGMNVVYALGAYPFGKLSDSVSHTTLLAWGLVVLIGADVLLASSSHWTWPMAWIGAGIALWGL HMAMTQGLLATMVTNAAPADLRGTAFGFFNLMSGLAMLLASTLAGVLWDQLGAPVTFAAGAAFCLVALAMLWRWRGTQLW ST >Mature_401_residues ADKPGHSQRLPAGIWALGFVSLLMDISSEMIHSLLPVFMVTVLGTSMWAVGLIEGFAEATALIVKVFSGVLSDYWGKRKP LAVLGYGLGALSKPLFALATTTGMVLAARLIDRVGKGLRGAPRDALVADLAPPSLRGAAFGLRQSLDTVGAFLGPLVAMG LMLLWANDFRAIFWVAIIPGFLAVALLLFGVREPATGRQAPRLNPISKDNLKRLSGPYWRVVAIGAVFTLARFSEAFLLL RALQGGLPVAYTPLVLIGMNVVYALGAYPFGKLSDSVSHTTLLAWGLVVLIGADVLLASSSHWTWPMAWIGAGIALWGLH MAMTQGLLATMVTNAAPADLRGTAFGFFNLMSGLAMLLASTLAGVLWDQLGAPVTFAAGAAFCLVALAMLWRWRGTQLWS T
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42675; Mature: 42544
Theoretical pI: Translated: 10.57; Mature: 10.57
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKPGHSQRLPAGIWALGFVSLLMDISSEMIHSLLPVFMVTVLGTSMWAVGLIEGFAEA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TALIVKVFSGVLSDYWGKRKPLAVLGYGLGALSKPLFALATTTGMVLAARLIDRVGKGLR HHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAPRDALVADLAPPSLRGAAFGLRQSLDTVGAFLGPLVAMGLMLLWANDFRAIFWVAIIP CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLAVALLLFGVREPATGRQAPRLNPISKDNLKRLSGPYWRVVAIGAVFTLARFSEAFLL HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LRALQGGLPVAYTPLVLIGMNVVYALGAYPFGKLSDSVSHTTLLAWGLVVLIGADVLLAS HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEC SSHWTWPMAWIGAGIALWGLHMAMTQGLLATMVTNAAPADLRGTAFGFFNLMSGLAMLLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH STLAGVLWDQLGAPVTFAAGAAFCLVALAMLWRWRGTQLWST HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure ADKPGHSQRLPAGIWALGFVSLLMDISSEMIHSLLPVFMVTVLGTSMWAVGLIEGFAEA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TALIVKVFSGVLSDYWGKRKPLAVLGYGLGALSKPLFALATTTGMVLAARLIDRVGKGLR HHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GAPRDALVADLAPPSLRGAAFGLRQSLDTVGAFLGPLVAMGLMLLWANDFRAIFWVAIIP CCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFLAVALLLFGVREPATGRQAPRLNPISKDNLKRLSGPYWRVVAIGAVFTLARFSEAFLL HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LRALQGGLPVAYTPLVLIGMNVVYALGAYPFGKLSDSVSHTTLLAWGLVVLIGADVLLAS HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHEEC SSHWTWPMAWIGAGIALWGLHMAMTQGLLATMVTNAAPADLRGTAFGFFNLMSGLAMLLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH STLAGVLWDQLGAPVTFAAGAAFCLVALAMLWRWRGTQLWST HHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]