| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is yhiI [C]
Identifier: 91789307
GI number: 91789307
Start: 3657067
End: 3658047
Strand: Direct
Name: yhiI [C]
Synonym: Bpro_3452
Alternate gene names: 91789307
Gene position: 3657067-3658047 (Clockwise)
Preceding gene: 91789306
Following gene: 91789308
Centisome position: 70.32
GC content: 69.93
Gene sequence:
>981_bases ATGAAGACACTGCAGTACTGCGCCTGCGCCCTGCTGGCCGCCAGCCTGCTGGTGGCATGCGACAGCAGGCAGCCTGACAC CTTCCCCGGCTATGCCGAGGCGGAATACGTCCGGCTGGCGGCGCCCATCAGCGGCACCCTGGCCCGGCTACACCTGAAGC GCGGCGATGCGGCGCCCGCATCGGCGGCCGCCTTCGTGCTGGAGCAGGACAGTGAACGGGCCGCGCGTGAGGAGGCGGCT CACCGCGTGGCGCGCGCGCAGGACAACCTGGCCAACCTGCGCCAGGGCAAGCGCCCCGATGAACTGGCAGCCATCCGCGC GCAACTGGCGCAAGGCGAGGCCGCGCTGGCGCTGTCGTCTGCCGAACTGGCACGCAGCAACCGCCTGGTGGCGCAGCAGT TCCTCTCGCCGGCCAGCCTGGACCAGGCCCGCACCGCCGTGGCACGCGACCAGGGCCGCGTCAACGAACTGAACGCTCAA CTGCGCCAGGCCATGCAGGGTGCACGCAGCGCCGAGATCAGCGCTGCCGAACAGGAAGTCAAGGCCGCACAGGCGCAACT GCAGCAGGCGGGCTGGCGAGTCGACCAGAAAACCCAGCGCACCCCGGTGGCCGGCGAGGTGGTGGACGTGCTGTACCGCG AAGGCGAATGGGTGCCCGCTGGCGCGGCCGTGCTGACCCTGCTGCCGCCGGCCAATATCAAGGCGCGCTTTTTCCTGCCG CAAACCCAGCTCGGCACCATCGCCATCGGCCAGGCGGTGCAGTTGCAGTGCGACGGCTGCGGCGCCGCGATGGCGGCAAA AATCACTTTCATCGCGCGGGAAGCCGAGTACACCTCACCCCTCATCTACAGCAAGGAAAACCGCGCCAAGCTCGTCTTCA TGGTCGAGGCGCAACCCGGCCTGACGGACGCGCCACGCCTGCACCCGGGCCAACCGCTGGAGGTACGCCTGGGGAGTAAA GCCGCGGGGCGGGCGCCATGA
Upstream 100 bases:
>100_bases TCTCTGAAGAGGCCCTGGCCCAACGCATCGAGTTCGCCCTGCGCGGGCTGACGCCTTCTTCCGGAGACAAAAGGGACATA AGAGACACAAGGGACACACG
Downstream 100 bases:
>100_bases GCCGCCGGGCCGCTCCCAAGGCGAATGGCACCGCAGCGCGTAGCGCGGAGGTTACCCCATGAACCGCCGGGCCGCTCCCA GGGCGAATGGCAGCGCGGAG
Product: HlyD family secretion protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MKTLQYCACALLAASLLVACDSRQPDTFPGYAEAEYVRLAAPISGTLARLHLKRGDAAPASAAAFVLEQDSERAAREEAA HRVARAQDNLANLRQGKRPDELAAIRAQLAQGEAALALSSAELARSNRLVAQQFLSPASLDQARTAVARDQGRVNELNAQ LRQAMQGARSAEISAAEQEVKAAQAQLQQAGWRVDQKTQRTPVAGEVVDVLYREGEWVPAGAAVLTLLPPANIKARFFLP QTQLGTIAIGQAVQLQCDGCGAAMAAKITFIAREAEYTSPLIYSKENRAKLVFMVEAQPGLTDAPRLHPGQPLEVRLGSK AAGRAP
Sequences:
>Translated_326_residues MKTLQYCACALLAASLLVACDSRQPDTFPGYAEAEYVRLAAPISGTLARLHLKRGDAAPASAAAFVLEQDSERAAREEAA HRVARAQDNLANLRQGKRPDELAAIRAQLAQGEAALALSSAELARSNRLVAQQFLSPASLDQARTAVARDQGRVNELNAQ LRQAMQGARSAEISAAEQEVKAAQAQLQQAGWRVDQKTQRTPVAGEVVDVLYREGEWVPAGAAVLTLLPPANIKARFFLP QTQLGTIAIGQAVQLQCDGCGAAMAAKITFIAREAEYTSPLIYSKENRAKLVFMVEAQPGLTDAPRLHPGQPLEVRLGSK AAGRAP >Mature_326_residues MKTLQYCACALLAASLLVACDSRQPDTFPGYAEAEYVRLAAPISGTLARLHLKRGDAAPASAAAFVLEQDSERAAREEAA HRVARAQDNLANLRQGKRPDELAAIRAQLAQGEAALALSSAELARSNRLVAQQFLSPASLDQARTAVARDQGRVNELNAQ LRQAMQGARSAEISAAEQEVKAAQAQLQQAGWRVDQKTQRTPVAGEVVDVLYREGEWVPAGAAVLTLLPPANIKARFFLP QTQLGTIAIGQAVQLQCDGCGAAMAAKITFIAREAEYTSPLIYSKENRAKLVFMVEAQPGLTDAPRLHPGQPLEVRLGSK AAGRAP
Specific function: Unknown
COG id: COG0845
COG function: function code M; Membrane-fusion protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0194 family [H]
Homologues:
Organism=Escherichia coli, GI1789900, Length=313, Percent_Identity=25.5591054313099, Blast_Score=65, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006143 - InterPro: IPR022936 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 34822; Mature: 34822
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTLQYCACALLAASLLVACDSRQPDTFPGYAEAEYVRLAAPISGTLARLHLKRGDAAPA CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHEEECCCCCCCC SAAAFVLEQDSERAAREEAAHRVARAQDNLANLRQGKRPDELAAIRAQLAQGEAALALSS HHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHEEEHH AELARSNRLVAQQFLSPASLDQARTAVARDQGRVNELNAQLRQAMQGARSAEISAAEQEV HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH KAAQAQLQQAGWRVDQKTQRTPVAGEVVDVLYREGEWVPAGAAVLTLLPPANIKARFFLP HHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECC QTQLGTIAIGQAVQLQCDGCGAAMAAKITFIAREAEYTSPLIYSKENRAKLVFMVEAQPG CCCCCEEEECCEEEEEECCCCHHHHHHHHEEEECCCCCCCEEEECCCCEEEEEEEECCCC LTDAPRLHPGQPLEVRLGSKAAGRAP CCCCCCCCCCCCEEEEECCCCCCCCC >Mature Secondary Structure MKTLQYCACALLAASLLVACDSRQPDTFPGYAEAEYVRLAAPISGTLARLHLKRGDAAPA CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHEEECCCCCCCC SAAAFVLEQDSERAAREEAAHRVARAQDNLANLRQGKRPDELAAIRAQLAQGEAALALSS HHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHEEEHH AELARSNRLVAQQFLSPASLDQARTAVARDQGRVNELNAQLRQAMQGARSAEISAAEQEV HHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH KAAQAQLQQAGWRVDQKTQRTPVAGEVVDVLYREGEWVPAGAAVLTLLPPANIKARFFLP HHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEECC QTQLGTIAIGQAVQLQCDGCGAAMAAKITFIAREAEYTSPLIYSKENRAKLVFMVEAQPG CCCCCEEEECCEEEEEECCCCHHHHHHHHEEEECCCCCCCEEEECCCCEEEEEEEECCCC LTDAPRLHPGQPLEVRLGSKAAGRAP CCCCCCCCCCCCEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA