Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is adhB [H]

Identifier: 91789304

GI number: 91789304

Start: 3653772

End: 3655058

Strand: Direct

Name: adhB [H]

Synonym: Bpro_3449

Alternate gene names: 91789304

Gene position: 3653772-3655058 (Clockwise)

Preceding gene: 91789303

Following gene: 91789306

Centisome position: 70.26

GC content: 67.44

Gene sequence:

>1287_bases
ATGAAAAAAATAATCAAGCCCGTGCTCGCAGTGAGCCTGCTGGTCGCCGGTCTTGCCGCGCTGGTCTGGACCCTGAATGT
GCGTGACGAGGTGGACGTGAAGGCGCCCATGGCGACTGCCGGAGCCAGCGACAGCCTGATCGCCCGCGGTGCCTACCTGG
CGCGTGCCGGCAACTGCATGACCTGCCACACGGCGCGCGGCGGCCAGAACTATGCGGGCGGGCTCGGCATCGCCACACCC
TTTGGCACCGTGTTCACCTCCAACCTCACGCCCGATGACAAAACCGGTATCGGCACCTGGTCGTCAGCACACTTCTGGCG
CGCCATGCACAACGGGCGCTCCAAAAGCGGCCGCCTGCTGTACCCGGCATTCCCCTACCCCAGTTACACGCAGGCCACGC
GCGAGGATTCGGACGCGATCTTTGCCTACCTGAACAGCCTGCCCGCCGTGGCGCAGCCCAACCGCCCCCACGAGCTGCGG
TTTCCCTACCAGTCGCAAGCGGCACTGGCGGTATGGCGGGCACTGTATTTCAAGCCCGGCGTCTACGAGCCAGACACCCG
CCGCAGCGCCGATTGGAACCGCGGAGCCTACCTGGTGAAAGGCCTGGGCCACTGCAGTGCCTGCCACACCGCACGCAACG
TGATGGGGGCCAGCGACGAAGGCGTCGACCTCGCGGGGGGCCTGATCCCGATGCAAAACTGGTACGCCCCCTCGCTCGCG
TCATCCGCTGAAGCCGGGGTGGGCGAATGGGACCGCGAGCACATCGTGAGCCTGCTCAAGAACGGCGTGTCGCCACGCGC
CTCGGCCACCGGACCGATGGCCGAGGTCGTGCTGCGCAGCACGCAGTACCTGAGCGACGACGACCTGGGTGCCATGGCAC
TGTTCCTCAAGGAGCTTGCGGCAGCCCCCTCGGCGAACGGGACAGCGCCTGCTTCCGGCACTCCGGCCATTCCCGGGGCA
CGGGGCGCCAAACTGTACGAGCTGCATTGCGCCCAGTGCCACGGCGCCAAGGGCCAGGGCGTGCCCCATGCCTACCCGGC
GCTCGCAGGCAACCGCGCAGTGACCATGCCCTCTGGCGTCAACCTGGTGCAGATCGTGCTCAACGGCGGTTACGCGCCCG
CCACCGCTGGCAACCCGCGCCCTTATGGCATGCCGCCGTTTGTGCTGGTTCTGGGCGACAGTGAGATCGCGGCGGTCCTC
ACCCATATCCGCGGCTCGTGGGGCAACCAGGCCAGCGAAATCACGCCGATCGAAGTGAACCGCATGCGCGCCAACCAGGG
GCGGTGA

Upstream 100 bases:

>100_bases
CAAGCGCCTTGCCCGCACTGGCGCCGGGTGCCCGGCCCATCGACTGCGGCAGCGCGCCGCAAGCGCTGTCCGCCGATGCA
GCGCCACCGAAGGCCGTGAA

Downstream 100 bases:

>100_bases
AGACGCATCCGGTGGATGCCGGATGCCGGGCACTACGTCCTCAGGAAGTCATCCGGTCGCGGTGAGCCAGCGCGGGAAAC
CACTTCAGCCACAACGCGGC

Product: class I cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKKIIKPVLAVSLLVAGLAALVWTLNVRDEVDVKAPMATAGASDSLIARGAYLARAGNCMTCHTARGGQNYAGGLGIATP
FGTVFTSNLTPDDKTGIGTWSSAHFWRAMHNGRSKSGRLLYPAFPYPSYTQATREDSDAIFAYLNSLPAVAQPNRPHELR
FPYQSQAALAVWRALYFKPGVYEPDTRRSADWNRGAYLVKGLGHCSACHTARNVMGASDEGVDLAGGLIPMQNWYAPSLA
SSAEAGVGEWDREHIVSLLKNGVSPRASATGPMAEVVLRSTQYLSDDDLGAMALFLKELAAAPSANGTAPASGTPAIPGA
RGAKLYELHCAQCHGAKGQGVPHAYPALAGNRAVTMPSGVNLVQIVLNGGYAPATAGNPRPYGMPPFVLVLGDSEIAAVL
THIRGSWGNQASEITPIEVNRMRANQGR

Sequences:

>Translated_428_residues
MKKIIKPVLAVSLLVAGLAALVWTLNVRDEVDVKAPMATAGASDSLIARGAYLARAGNCMTCHTARGGQNYAGGLGIATP
FGTVFTSNLTPDDKTGIGTWSSAHFWRAMHNGRSKSGRLLYPAFPYPSYTQATREDSDAIFAYLNSLPAVAQPNRPHELR
FPYQSQAALAVWRALYFKPGVYEPDTRRSADWNRGAYLVKGLGHCSACHTARNVMGASDEGVDLAGGLIPMQNWYAPSLA
SSAEAGVGEWDREHIVSLLKNGVSPRASATGPMAEVVLRSTQYLSDDDLGAMALFLKELAAAPSANGTAPASGTPAIPGA
RGAKLYELHCAQCHGAKGQGVPHAYPALAGNRAVTMPSGVNLVQIVLNGGYAPATAGNPRPYGMPPFVLVLGDSEIAAVL
THIRGSWGNQASEITPIEVNRMRANQGR
>Mature_428_residues
MKKIIKPVLAVSLLVAGLAALVWTLNVRDEVDVKAPMATAGASDSLIARGAYLARAGNCMTCHTARGGQNYAGGLGIATP
FGTVFTSNLTPDDKTGIGTWSSAHFWRAMHNGRSKSGRLLYPAFPYPSYTQATREDSDAIFAYLNSLPAVAQPNRPHELR
FPYQSQAALAVWRALYFKPGVYEPDTRRSADWNRGAYLVKGLGHCSACHTARNVMGASDEGVDLAGGLIPMQNWYAPSLA
SSAEAGVGEWDREHIVSLLKNGVSPRASATGPMAEVVLRSTQYLSDDDLGAMALFLKELAAAPSANGTAPASGTPAIPGA
RGAKLYELHCAQCHGAKGQGVPHAYPALAGNRAVTMPSGVNLVQIVLNGGYAPATAGNPRPYGMPPFVLVLGDSEIAAVL
THIRGSWGNQASEITPIEVNRMRANQGR

Specific function: Dehydration of primary alcohols (exception:methanol) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 cytochrome c domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR014353 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 45194; Mature: 45194

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIKPVLAVSLLVAGLAALVWTLNVRDEVDVKAPMATAGASDSLIARGAYLARAGNCM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHCCCEE
TCHTARGGQNYAGGLGIATPFGTVFTSNLTPDDKTGIGTWSSAHFWRAMHNGRSKSGRLL
EEECCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEE
YPAFPYPSYTQATREDSDAIFAYLNSLPAVAQPNRPHELRFPYQSQAALAVWRALYFKPG
EECCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCC
VYEPDTRRSADWNRGAYLVKGLGHCSACHTARNVMGASDEGVDLAGGLIPMQNWYAPSLA
CCCCCCCCCCCCCCCEEEEHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
SSAEAGVGEWDREHIVSLLKNGVSPRASATGPMAEVVLRSTQYLSDDDLGAMALFLKELA
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AAPSANGTAPASGTPAIPGARGAKLYELHCAQCHGAKGQGVPHAYPALAGNRAVTMPSGV
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCHHHCCCCEEECCCCC
NLVQIVLNGGYAPATAGNPRPYGMPPFVLVLGDSEIAAVLTHIRGSWGNQASEITPIEVN
CEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEHH
RMRANQGR
HCCCCCCC
>Mature Secondary Structure
MKKIIKPVLAVSLLVAGLAALVWTLNVRDEVDVKAPMATAGASDSLIARGAYLARAGNCM
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHCCCEE
TCHTARGGQNYAGGLGIATPFGTVFTSNLTPDDKTGIGTWSSAHFWRAMHNGRSKSGRLL
EEECCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEE
YPAFPYPSYTQATREDSDAIFAYLNSLPAVAQPNRPHELRFPYQSQAALAVWRALYFKPG
EECCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCC
VYEPDTRRSADWNRGAYLVKGLGHCSACHTARNVMGASDEGVDLAGGLIPMQNWYAPSLA
CCCCCCCCCCCCCCCEEEEHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
SSAEAGVGEWDREHIVSLLKNGVSPRASATGPMAEVVLRSTQYLSDDDLGAMALFLKELA
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AAPSANGTAPASGTPAIPGARGAKLYELHCAQCHGAKGQGVPHAYPALAGNRAVTMPSGV
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCCCCCHHHCCCCEEECCCCC
NLVQIVLNGGYAPATAGNPRPYGMPPFVLVLGDSEIAAVLTHIRGSWGNQASEITPIEVN
CEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCEEHH
RMRANQGR
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA