Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 91789268

GI number: 91789268

Start: 3609723

End: 3610643

Strand: Reverse

Name: yafC [H]

Synonym: Bpro_3413

Alternate gene names: 91789268

Gene position: 3610643-3609723 (Counterclockwise)

Preceding gene: 91789271

Following gene: 91789265

Centisome position: 69.43

GC content: 64.06

Gene sequence:

>921_bases
GTGAAACGAAACTTCGACGATCTACTGCTGGGCAGCATTGAGCTGTTCTGCCTGGCGGCCGAGCTCAGCAGCTTTACCGC
CGCCGCCGCGGCGGCGAGCGTGACGCCGGCGGCGGTCAGCCGTTCGGTGTCGCGATTGGAGGAACGATTGGGGGTGCGCC
TCTTCGTGCGCACGACGCGGCAAATCAGGTTGACCGACGGCGGCCGCGTGTACTTTGAACAGTGCCGCCAGGCCTTGTTG
CAGCTGGTCGATGCCGAGCGCCTGGTAACCGGCGGCCAGGCCGCCCCGGCCGGTTTGCTGCGCATCAGCATGCCGACGCC
CTATGCGCATTACCGCGTGCTGCCCCTGCTGCCGCAGTTTCGCAAGCGCTATCCGCAAGTGCAGGTCGACGTCCACCTGA
GCAACCGGAACATCGATTTTGCGGACGAGGGCTACGACCTGGCGATACGCGGGCGCGCGCCGGACGACTCCAACCTGATC
GCCCGCAAGCTGGAAGACGCGGCGCTGGTGCTGGTAGCCGCGCCGTCCTACCTGAAGCGCGCGGGGAAACCGAAAACGCT
GGACGACCTGCAAAAGCATGACTGCATCCAGTTTGAATTACCCAGCACCGGCCGCAAAATCCCATGGACTTTCCAGCACG
ATGGCAAGGACATCGACGTCGTGACCAAGGGCAGCTATTGCTGCCTGGACGATGTGCTCGGCGTCGCGACCCTGGTACGC
AGCGGTGCAGGGCTGGTGCAAACCTACCGCTACATCGTCGAGAAGGATTTGAAGAACGGCGACCTGGTCGAGCTGATGCC
GCAGTTTGGCGGCAGCTCGCGGCCCTTCATCCTGCTGTATCCGCATGCGCGCCATTTGTCCCTGCGCGTGCGGACCTTCG
TGGATTTTCTGGTCGAGAACCTGACGACCGGCCTGCGCTGA

Upstream 100 bases:

>100_bases
ATTCGGTCCCCGTGTGATGAACTATATTTATGTGATCAGTGAAGATAAATATTGGTTTTCACAAATTACTTGATACATGG
CGTAATCAATAGGGGATTTT

Downstream 100 bases:

>100_bases
ACTGCACGCCTGCGGTGAGCGCTAGTACTTCGACACAGAGGTGTCGGAACACAATGAAAGCGATGGATTCGGGCCCAGGC
CCAGGCGCAAACCGTAGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKRNFDDLLLGSIELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTRQIRLTDGGRVYFEQCRQALL
QLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQFRKRYPQVQVDVHLSNRNIDFADEGYDLAIRGRAPDDSNLI
ARKLEDAALVLVAAPSYLKRAGKPKTLDDLQKHDCIQFELPSTGRKIPWTFQHDGKDIDVVTKGSYCCLDDVLGVATLVR
SGAGLVQTYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFLVENLTTGLR

Sequences:

>Translated_306_residues
MKRNFDDLLLGSIELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTRQIRLTDGGRVYFEQCRQALL
QLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQFRKRYPQVQVDVHLSNRNIDFADEGYDLAIRGRAPDDSNLI
ARKLEDAALVLVAAPSYLKRAGKPKTLDDLQKHDCIQFELPSTGRKIPWTFQHDGKDIDVVTKGSYCCLDDVLGVATLVR
SGAGLVQTYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFLVENLTTGLR
>Mature_306_residues
MKRNFDDLLLGSIELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTRQIRLTDGGRVYFEQCRQALL
QLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQFRKRYPQVQVDVHLSNRNIDFADEGYDLAIRGRAPDDSNLI
ARKLEDAALVLVAAPSYLKRAGKPKTLDDLQKHDCIQFELPSTGRKIPWTFQHDGKDIDVVTKGSYCCLDDVLGVATLVR
SGAGLVQTYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFLVENLTTGLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=35.0515463917526, Blast_Score=169, Evalue=3e-43,
Organism=Escherichia coli, GI145693193, Length=287, Percent_Identity=30.6620209059233, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=28.5223367697594, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=28.1879194630872, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=28.7719298245614, Blast_Score=118, Evalue=6e-28,
Organism=Escherichia coli, GI1789440, Length=277, Percent_Identity=28.5198555956679, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=28.0821917808219, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1788706, Length=190, Percent_Identity=32.1052631578947, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=24.6666666666667, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=33.5078534031414, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=36.71875, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.7627118644068, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=23.7931034482759, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787806, Length=122, Percent_Identity=33.6065573770492, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=123, Percent_Identity=30.8943089430894, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790011, Length=268, Percent_Identity=24.6268656716418, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34100; Mature: 34100

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNFDDLLLGSIELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEEEECE
QIRLTDGGRVYFEQCRQALLQLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQF
EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHEEHHHCCHHH
RKRYPQVQVDVHLSNRNIDFADEGYDLAIRGRAPDDSNLIARKLEDAALVLVAAPSYLKR
HHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCEEEEEECCHHHHH
AGKPKTLDDLQKHDCIQFELPSTGRKIPWTFQHDGKDIDVVTKGSYCCLDDVLGVATLVR
CCCCCCHHHHHHCCCEEEECCCCCCCCCEEECCCCCEEEEEECCCEECHHHHHHHHHHHH
SGAGLVQTYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFLVEN
CCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
LTTGLR
HHHCCC
>Mature Secondary Structure
MKRNFDDLLLGSIELFCLAAELSSFTAAAAAASVTPAAVSRSVSRLEERLGVRLFVRTTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEEEEECE
QIRLTDGGRVYFEQCRQALLQLVDAERLVTGGQAAPAGLLRISMPTPYAHYRVLPLLPQF
EEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHEEHHHCCHHH
RKRYPQVQVDVHLSNRNIDFADEGYDLAIRGRAPDDSNLIARKLEDAALVLVAAPSYLKR
HHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCEEEEEECCHHHHH
AGKPKTLDDLQKHDCIQFELPSTGRKIPWTFQHDGKDIDVVTKGSYCCLDDVLGVATLVR
CCCCCCHHHHHHCCCEEEECCCCCCCCCEEECCCCCEEEEEECCCEECHHHHHHHHHHHH
SGAGLVQTYRYIVEKDLKNGDLVELMPQFGGSSRPFILLYPHARHLSLRVRTFVDFLVEN
CCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH
LTTGLR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]