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The map label for this gene is ybhD [H]

Identifier: 91789202

GI number: 91789202

Start: 3542849

End: 3543835

Strand: Reverse

Name: ybhD [H]

Synonym: Bpro_3346

Alternate gene names: 91789202

Gene position: 3543835-3542849 (Counterclockwise)

Preceding gene: 91789205

Following gene: 91789200

Centisome position: 68.15

GC content: 59.68

Gene sequence:

>987_bases
ATGAATGTGACCCTGCGTCAATTACGTGCCTTTGTGGCTGTTGCGAAGTCCGCGAGCTTTACCGAGGCAGCCGCCACGCT
TCACATTACCCAGTCGGCACTGAGCGGGCTGATCAAGGAGCTGGAGCACGTGCTGGGCGTGCAGGTGGTTTACCGCAGCA
CGCGCAAAGTGCAGCTGTCTGAGGTCGGCGGCGAGTTCTTGCCTCTGGCCACCCGTATCCTGCAGGACCTTGACGAGGCG
TACCACGCGATCCATGACCTGAAGGCCTTGAAGAGCGGCGTTGTCCGGGTCGCTGCTCCGCAGCTGATGGCCTGTACGCT
GATGCCCGACGCCATTGCGGCATTCAACAGCAAATACCCGGCGGTGCAGATTCGCCTTTCGGACTGTGCGGTGGAGGCGG
TGCAGTCCAAAGTGCATAGTGGCGAAGTCGATTTCGCCATTGGGCCGGAACGGGAGGTGTCACCTGAAATCGCAACGCAC
AGCCTGTTTGAAATACCGTTTGTCGCGGTATTTCCGCCCGATCATCCGCTGGGTAAATTGAAGCGCGTGACCTGGACAGA
TATTTCCCGATATCCGCTGATTTCCCTGCAGGGGGAATACACGCAGAGGCTAAGCGCGGATCTGCAGGCCGCATCCGGCA
ACCTGACGCTGAGTCCCGGCATGGAAGTCACCTTCATGACCACGGCGCTCAGCATGGTGAGTGCCGGACTGGGGGTGACG
ACCTGCCTGCCGTATGCCACGTCGCTACTCAATCTTTACGGGCTGCAAACCCGTTTGCTGCAGGCGCCCACGCTCAGACG
GAAGTTTTACCTGCTGACCAAGAAAGACCGCCCGCTGTCACCGGCGGCCCAGGGATTTTCAGACTTTTTGCTGGCGTACG
TGATGCAGCAGAAGTGGAGCGCAGACCGGAGTGTGCAAGCCGAAACAAAGGCCGCTACCAAGGCTGCTACTCCTGGGGCG
CGCTCACTCAGTACTCAACCGAAGTGA

Upstream 100 bases:

>100_bases
TTGAGAGAGGCGTTTCGTACGCGATGCGAGTAGAAGACAATCTGGCTTATTATTCAATCAACTTTTTCATATCAACTTAT
TACGTAATCCGATTAATCCG

Downstream 100 bases:

>100_bases
TGCTCGGCGCGCTGCGCGTTCGCTGTCACCTGTTCCCAAGTACAACCTGAAACCATGTAAGAAACTGTAGGACGCAGCGC
TAAGCCGTTGCGGGATGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNVTLRQLRAFVAVAKSASFTEAAATLHITQSALSGLIKELEHVLGVQVVYRSTRKVQLSEVGGEFLPLATRILQDLDEA
YHAIHDLKALKSGVVRVAAPQLMACTLMPDAIAAFNSKYPAVQIRLSDCAVEAVQSKVHSGEVDFAIGPEREVSPEIATH
SLFEIPFVAVFPPDHPLGKLKRVTWTDISRYPLISLQGEYTQRLSADLQAASGNLTLSPGMEVTFMTTALSMVSAGLGVT
TCLPYATSLLNLYGLQTRLLQAPTLRRKFYLLTKKDRPLSPAAQGFSDFLLAYVMQQKWSADRSVQAETKAATKAATPGA
RSLSTQPK

Sequences:

>Translated_328_residues
MNVTLRQLRAFVAVAKSASFTEAAATLHITQSALSGLIKELEHVLGVQVVYRSTRKVQLSEVGGEFLPLATRILQDLDEA
YHAIHDLKALKSGVVRVAAPQLMACTLMPDAIAAFNSKYPAVQIRLSDCAVEAVQSKVHSGEVDFAIGPEREVSPEIATH
SLFEIPFVAVFPPDHPLGKLKRVTWTDISRYPLISLQGEYTQRLSADLQAASGNLTLSPGMEVTFMTTALSMVSAGLGVT
TCLPYATSLLNLYGLQTRLLQAPTLRRKFYLLTKKDRPLSPAAQGFSDFLLAYVMQQKWSADRSVQAETKAATKAATPGA
RSLSTQPK
>Mature_328_residues
MNVTLRQLRAFVAVAKSASFTEAAATLHITQSALSGLIKELEHVLGVQVVYRSTRKVQLSEVGGEFLPLATRILQDLDEA
YHAIHDLKALKSGVVRVAAPQLMACTLMPDAIAAFNSKYPAVQIRLSDCAVEAVQSKVHSGEVDFAIGPEREVSPEIATH
SLFEIPFVAVFPPDHPLGKLKRVTWTDISRYPLISLQGEYTQRLSADLQAASGNLTLSPGMEVTFMTTALSMVSAGLGVT
TCLPYATSLLNLYGLQTRLLQAPTLRRKFYLLTKKDRPLSPAAQGFSDFLLAYVMQQKWSADRSVQAETKAATKAATPGA
RSLSTQPK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=310, Percent_Identity=32.258064516129, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI157672245, Length=281, Percent_Identity=29.1814946619217, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=28.9655172413793, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1788887, Length=251, Percent_Identity=31.0756972111554, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787879, Length=299, Percent_Identity=29.7658862876254, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87081904, Length=196, Percent_Identity=30.6122448979592, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787601, Length=296, Percent_Identity=26.6891891891892, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788296, Length=229, Percent_Identity=27.5109170305677, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787589, Length=181, Percent_Identity=32.0441988950276, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788481, Length=293, Percent_Identity=28.6689419795222, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787530, Length=242, Percent_Identity=25.6198347107438, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790399, Length=241, Percent_Identity=24.896265560166, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=242, Percent_Identity=28.099173553719, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790262, Length=189, Percent_Identity=25.9259259259259, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787806, Length=149, Percent_Identity=31.5436241610738, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786401, Length=141, Percent_Identity=34.0425531914894, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=190, Percent_Identity=30, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789204, Length=314, Percent_Identity=23.8853503184713, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788297, Length=297, Percent_Identity=25.9259259259259, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789506, Length=168, Percent_Identity=27.3809523809524, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=255, Percent_Identity=28.6274509803922, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081978, Length=200, Percent_Identity=28, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786508, Length=180, Percent_Identity=28.8888888888889, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787128, Length=143, Percent_Identity=25.8741258741259, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=271, Percent_Identity=26.5682656826568, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35629; Mature: 35629

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLRQLRAFVAVAKSASFTEAAATLHITQSALSGLIKELEHVLGVQVVYRSTRKVQLS
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHH
EVGGEFLPLATRILQDLDEAYHAIHDLKALKSGVVRVAAPQLMACTLMPDAIAAFNSKYP
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCHHHHHHHCCCCC
AVQIRLSDCAVEAVQSKVHSGEVDFAIGPEREVSPEIATHSLFEIPFVAVFPPDHPLGKL
EEEEEEHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCHHHH
KRVTWTDISRYPLISLQGEYTQRLSADLQAASGNLTLSPGMEVTFMTTALSMVSAGLGVT
CCCEECCCCCCCEEEECCHHHHHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHCCCCHH
TCLPYATSLLNLYGLQTRLLQAPTLRRKFYLLTKKDRPLSPAAQGFSDFLLAYVMQQKWS
HHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
ADRSVQAETKAATKAATPGARSLSTQPK
CCCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MNVTLRQLRAFVAVAKSASFTEAAATLHITQSALSGLIKELEHVLGVQVVYRSTRKVQLS
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHH
EVGGEFLPLATRILQDLDEAYHAIHDLKALKSGVVRVAAPQLMACTLMPDAIAAFNSKYP
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCHHHHHHHCCCCC
AVQIRLSDCAVEAVQSKVHSGEVDFAIGPEREVSPEIATHSLFEIPFVAVFPPDHPLGKL
EEEEEEHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCEEEEECCCCCHHHH
KRVTWTDISRYPLISLQGEYTQRLSADLQAASGNLTLSPGMEVTFMTTALSMVSAGLGVT
CCCEECCCCCCCEEEECCHHHHHHHHHHHHCCCCEEECCCCEEEHHHHHHHHHHCCCCHH
TCLPYATSLLNLYGLQTRLLQAPTLRRKFYLLTKKDRPLSPAAQGFSDFLLAYVMQQKWS
HHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHC
ADRSVQAETKAATKAATPGARSLSTQPK
CCCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]