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The map label for this gene is hdfR [H]

Identifier: 91789093

GI number: 91789093

Start: 3420853

End: 3421752

Strand: Direct

Name: hdfR [H]

Synonym: Bpro_3233

Alternate gene names: 91789093

Gene position: 3420853-3421752 (Clockwise)

Preceding gene: 91789092

Following gene: 91789098

Centisome position: 65.78

GC content: 66.78

Gene sequence:

>900_bases
ATGGATATCAACCTCGCCCGCACTTTCCTGGAGATCGTCTCCTGCCACAGCTTTGCCCAGGCCGCTGATCGCCTGCATGT
GACCCAGACGGCGATCAGCGCACGGGTGAAGACGCTGGAGGACCTGCTGGGACGCAAGCTCTTCGTGCGAAACCGGGCCG
GGGCCTCGCTGACGTCAGCCGGTGAGCAGTTCGTTCGCCACGCCATGACGATGGTGCAGGTCTGGGAGCGGGCCCGGCAG
CAGATGGCGGTGCCGCCGGGACGCCGCGCGCTGGTCACGGTGGGCTGTGAAATCAGCCTGTGGGATCCGCTCATGCTCGA
CTGGCTGCTCGGGATGCGCGAAAGTGCGTCGGATCTCGCGCTGCGCGCAGAAGTGGGCGTTGCGGAGGACCTGCTGGAGC
GCGTGGCCAACGGAACGCTGGACATCGTCGTTGCCTATGCGCCGCGGCAGCGGCCCGGCCTGCGGATCGAACTATTGATC
GAGGAAAAGCTGGTGCTGGTTACAACGACCCGCGGCTCCCAGGCGCCGCAGGCGGCCGACTATGTGTACGTGGACTGGGG
CAGCGAGTTTGCGGCGCAGCACAGCCTGGCTTTTCCCGAACTATCAAGCGTGGGCGTGTCGTCCAGCCTCGGGCCGCTGG
GACTGGGCTACCTGCTTACCGTCGGCGGGGCGGGCTATTTCCGGCAGAACGTCGTGCGTAGCCACCTGAAGGAAGGACGA
CTGCACCGGGTGCCCGGGGCGCCCGAATTCCTGTACCCGGCTTACGCCGTCTATGCGGCAGACGCAGACATGGCGGTGCT
GGAACCCGCTCTGGCCGGCCTGCGGCAGGCCGCCAAAGGCGCCGTGGGCAACCAGCAGGCGGCCCGGCCTTCAAAAACGG
GAAATGTCGGGAAAGCCTGA

Upstream 100 bases:

>100_bases
CTATAGGGTTTACCATTATAAAAGTAAACCGACTTATATTGCATTTCAGTGCATAAAATTTGCTGGATGTAGCCGCATTT
GCCGGCGCTGAAGGCCCTCC

Downstream 100 bases:

>100_bases
AAAAAAAGTAACCGTTTGCCAATGTCGTTCCTCAATGCGCCCCAGCCGCAGCATCCGAACTCCCTGCCCCGACCCTGGTG
TGCCGCGTCAAATACACCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: H-NS-dependent flhDC regulator [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDINLARTFLEIVSCHSFAQAADRLHVTQTAISARVKTLEDLLGRKLFVRNRAGASLTSAGEQFVRHAMTMVQVWERARQ
QMAVPPGRRALVTVGCEISLWDPLMLDWLLGMRESASDLALRAEVGVAEDLLERVANGTLDIVVAYAPRQRPGLRIELLI
EEKLVLVTTTRGSQAPQAADYVYVDWGSEFAAQHSLAFPELSSVGVSSSLGPLGLGYLLTVGGAGYFRQNVVRSHLKEGR
LHRVPGAPEFLYPAYAVYAADADMAVLEPALAGLRQAAKGAVGNQQAARPSKTGNVGKA

Sequences:

>Translated_299_residues
MDINLARTFLEIVSCHSFAQAADRLHVTQTAISARVKTLEDLLGRKLFVRNRAGASLTSAGEQFVRHAMTMVQVWERARQ
QMAVPPGRRALVTVGCEISLWDPLMLDWLLGMRESASDLALRAEVGVAEDLLERVANGTLDIVVAYAPRQRPGLRIELLI
EEKLVLVTTTRGSQAPQAADYVYVDWGSEFAAQHSLAFPELSSVGVSSSLGPLGLGYLLTVGGAGYFRQNVVRSHLKEGR
LHRVPGAPEFLYPAYAVYAADADMAVLEPALAGLRQAAKGAVGNQQAARPSKTGNVGKA
>Mature_299_residues
MDINLARTFLEIVSCHSFAQAADRLHVTQTAISARVKTLEDLLGRKLFVRNRAGASLTSAGEQFVRHAMTMVQVWERARQ
QMAVPPGRRALVTVGCEISLWDPLMLDWLLGMRESASDLALRAEVGVAEDLLERVANGTLDIVVAYAPRQRPGLRIELLI
EEKLVLVTTTRGSQAPQAADYVYVDWGSEFAAQHSLAFPELSSVGVSSSLGPLGLGYLLTVGGAGYFRQNVVRSHLKEGR
LHRVPGAPEFLYPAYAVYAADADMAVLEPALAGLRQAAKGAVGNQQAARPSKTGNVGKA

Specific function: Negatively regulates the transcription of the flagellar master operon flhDC by binding to the upstream region of the operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48994962, Length=271, Percent_Identity=27.3062730627306, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788297, Length=173, Percent_Identity=29.4797687861272, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788887, Length=173, Percent_Identity=26.0115606936416, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020890
- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32304; Mature: 32304

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINLARTFLEIVSCHSFAQAADRLHVTQTAISARVKTLEDLLGRKLFVRNRAGASLTSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
GEQFVRHAMTMVQVWERARQQMAVPPGRRALVTVGCEISLWDPLMLDWLLGMRESASDLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEECCHHHHHHHHHCCCCCHHHE
LRAEVGVAEDLLERVANGTLDIVVAYAPRQRPGLRIELLIEEKLVLVTTTRGSQAPQAAD
EHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCC
YVYVDWGSEFAAQHSLAFPELSSVGVSSSLGPLGLGYLLTVGGAGYFRQNVVRSHLKEGR
EEEEECCCHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
LHRVPGAPEFLYPAYAVYAADADMAVLEPALAGLRQAAKGAVGNQQAARPSKTGNVGKA
EECCCCCCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDINLARTFLEIVSCHSFAQAADRLHVTQTAISARVKTLEDLLGRKLFVRNRAGASLTSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
GEQFVRHAMTMVQVWERARQQMAVPPGRRALVTVGCEISLWDPLMLDWLLGMRESASDLA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEECCHHHHHHHHHCCCCCHHHE
LRAEVGVAEDLLERVANGTLDIVVAYAPRQRPGLRIELLIEEKLVLVTTTRGSQAPQAAD
EHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCC
YVYVDWGSEFAAQHSLAFPELSSVGVSSSLGPLGLGYLLTVGGAGYFRQNVVRSHLKEGR
EEEEECCCHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
LHRVPGAPEFLYPAYAVYAADADMAVLEPALAGLRQAAKGAVGNQQAARPSKTGNVGKA
EECCCCCCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA