| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is ald [H]
Identifier: 91789082
GI number: 91789082
Start: 3411138
End: 3412256
Strand: Direct
Name: ald [H]
Synonym: Bpro_3222
Alternate gene names: 91789082
Gene position: 3411138-3412256 (Clockwise)
Preceding gene: 91789081
Following gene: 91789083
Centisome position: 65.6
GC content: 67.83
Gene sequence:
>1119_bases ATGCTCATCGGAATTCCCAAGGAAATCAAGAACCATGAATACCGTGTCGGCCTGACACCGTCGTCCGTGCGTGAGCTGGC GGCGGCCGGCCACCGCGTGATCGTGGAGCACAACGCAGGCTCCGGCATCGGTGCCAGCGACGCCGAGTACGAAAAAGCGG GTGCCGGCATTGTCCAGGGGGCAGATGAAGTGTTTGCGCGCGCCGACATGGTGGTGAAGGTCAAGGAGCCGCAAGCCGCG GAGCGCGCACAGCTTCGGCCCGGCCAGTTGCTGTTCACTTACCTGCATCTGGCGCCCGACCCGCAGCAATGCAAGGAACT GGTCGACAGCGGCGCGGTCTGCATCGCCTACGAAACCGTGACCCAGGCCGGTGGCGGCCTGCCCTTGCTGGCGCCGATGT CCGAAGTGGCCGGCCGCATGTCGGTGCAGGCGGCTGCGCACAGCCTGGAGCGGGCCCATGGCGGCCGCGGCATACTGCTC GGAGGCGTGCCCGGTGTGGCGCCCGCCAAAATCGTGATCCTCGGCGCGGGCGTGGTCGGCTCCAACGCGGCACAGATCGC CGTGGGCACCGGTGCCCAGGTGGTGGTGATAGACCGCAGCCTCGATGCGCTGCGCCGCATGGACCGCCTGCTGGGGGCGC GCGTGATCACCCTGTTCTCGAACCGCGACAACATCGAGGAGCAGGTGCTGTCGGCAGACGCGGTGATCGGCGGCGTGCTG ATTCCCGGCGCGGCCGCCCCCAAGCTCGTGTCGCGCGAGCTGCTGTCGCGCATGAAGCCGGGCTCGGTGGTGGTTGATGT GGCCATCGACCAGGGCGGCTGCTTCGAAACCTCGCACGCCACCACCCACGCCGACCCCACCTACGTGGTGGACGGCGTCG TGCACTACTGCGTGGCCAACATGCCGGGCGGCGTGCCGCGCACCTCCACCTATGCCCTGAACAACGCCACCCTGCCCTTT GTGCTGGCCTTGGCGAACAAAGGGTGGCGGCAGGCACTGAAGGACGACGTGCACCTGCGCAACGGCCTCAACGTCGCTGA CGGCAAGGTCACCTGCCTGGAGGTGGCGAATGACCTGCGCTACGTCTACCATGCCCCGCAAACCCTGCTGGCGGCCTGA
Upstream 100 bases:
>100_bases TGCCTTTGCCCCTTTTTTTAGCCCCTTCTTGCTTTATTGCTTTTATTGCCTTATTACTTCATTGACTTCATTGACTTCAT TGATCCAGGAGACAAACACC
Downstream 100 bases:
>100_bases ACGATGGAGCAACGCCCCTATTGGCTGTCGCAGGCACTCGCCGCCGAGCAAGGCGGCCCGGCCCCGGCGCTGGTGAGCGA CACGCGTGCCCAGTTGTGCA
Product: L-alanine dehydrogenase
Products: NA
Alternate protein names: 40 kDa antigen; TB43 [H]
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MLIGIPKEIKNHEYRVGLTPSSVRELAAAGHRVIVEHNAGSGIGASDAEYEKAGAGIVQGADEVFARADMVVKVKEPQAA ERAQLRPGQLLFTYLHLAPDPQQCKELVDSGAVCIAYETVTQAGGGLPLLAPMSEVAGRMSVQAAAHSLERAHGGRGILL GGVPGVAPAKIVILGAGVVGSNAAQIAVGTGAQVVVIDRSLDALRRMDRLLGARVITLFSNRDNIEEQVLSADAVIGGVL IPGAAAPKLVSRELLSRMKPGSVVVDVAIDQGGCFETSHATTHADPTYVVDGVVHYCVANMPGGVPRTSTYALNNATLPF VLALANKGWRQALKDDVHLRNGLNVADGKVTCLEVANDLRYVYHAPQTLLAA
Sequences:
>Translated_372_residues MLIGIPKEIKNHEYRVGLTPSSVRELAAAGHRVIVEHNAGSGIGASDAEYEKAGAGIVQGADEVFARADMVVKVKEPQAA ERAQLRPGQLLFTYLHLAPDPQQCKELVDSGAVCIAYETVTQAGGGLPLLAPMSEVAGRMSVQAAAHSLERAHGGRGILL GGVPGVAPAKIVILGAGVVGSNAAQIAVGTGAQVVVIDRSLDALRRMDRLLGARVITLFSNRDNIEEQVLSADAVIGGVL IPGAAAPKLVSRELLSRMKPGSVVVDVAIDQGGCFETSHATTHADPTYVVDGVVHYCVANMPGGVPRTSTYALNNATLPF VLALANKGWRQALKDDVHLRNGLNVADGKVTCLEVANDLRYVYHAPQTLLAA >Mature_372_residues MLIGIPKEIKNHEYRVGLTPSSVRELAAAGHRVIVEHNAGSGIGASDAEYEKAGAGIVQGADEVFARADMVVKVKEPQAA ERAQLRPGQLLFTYLHLAPDPQQCKELVDSGAVCIAYETVTQAGGGLPLLAPMSEVAGRMSVQAAAHSLERAHGGRGILL GGVPGVAPAKIVILGAGVVGSNAAQIAVGTGAQVVVIDRSLDALRRMDRLLGARVITLFSNRDNIEEQVLSADAVIGGVL IPGAAAPKLVSRELLSRMKPGSVVVDVAIDQGGCFETSHATTHADPTYVVDGVVHYCVANMPGGVPRTSTYALNNATLPF VLALANKGWRQALKDDVHLRNGLNVADGKVTCLEVANDLRYVYHAPQTLLAA
Specific function: May play a role in cell wall synthesis as L-alanine is an important constituent of the peptidoglycan layer [H]
COG id: COG0686
COG function: function code E; Alanine dehydrogenase
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AlaDH/PNT family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=397, Percent_Identity=31.7380352644836, Blast_Score=137, Evalue=2e-32, Organism=Homo sapiens, GI122939153, Length=397, Percent_Identity=31.7380352644836, Blast_Score=137, Evalue=2e-32, Organism=Escherichia coli, GI1787887, Length=377, Percent_Identity=29.973474801061, Blast_Score=130, Evalue=9e-32, Organism=Caenorhabditis elegans, GI17550456, Length=371, Percent_Identity=30.4582210242588, Blast_Score=142, Evalue=4e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007698 - InterPro: IPR008142 - InterPro: IPR008143 - InterPro: IPR007886 - InterPro: IPR008141 [H]
Pfam domain/function: PF01262 AlaDh_PNT_C; PF05222 AlaDh_PNT_N [H]
EC number: =1.4.1.1 [H]
Molecular weight: Translated: 38867; Mature: 38867
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIGIPKEIKNHEYRVGLTPSSVRELAAAGHRVIVEHNAGSGIGASDAEYEKAGAGIVQG CCCCCCHHHCCCCEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHCCCHHCC ADEVFARADMVVKVKEPQAAERAQLRPGQLLFTYLHLAPDPQQCKELVDSGAVCIAYETV HHHHHHHCCEEEEECCCCCHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEHH TQAGGGLPLLAPMSEVAGRMSVQAAAHSLERAHGGRGILLGGVPGVAPAKIVILGAGVVG HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCC SNAAQIAVGTGAQVVVIDRSLDALRRMDRLLGARVITLFSNRDNIEEQVLSADAVIGGVL CCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCEE IPGAAAPKLVSRELLSRMKPGSVVVDVAIDQGGCFETSHATTHADPTYVVDGVVHYCVAN CCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHC MPGGVPRTSTYALNNATLPFVLALANKGWRQALKDDVHLRNGLNVADGKVTCLEVANDLR CCCCCCCCCEEEECCCCHHHHEEHHCHHHHHHHHHHHHHHCCCEECCCCEEEEHHHHHHH YVYHAPQTLLAA HHHCCCHHHHCC >Mature Secondary Structure MLIGIPKEIKNHEYRVGLTPSSVRELAAAGHRVIVEHNAGSGIGASDAEYEKAGAGIVQG CCCCCCHHHCCCCEEEECCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHCCCHHCC ADEVFARADMVVKVKEPQAAERAQLRPGQLLFTYLHLAPDPQQCKELVDSGAVCIAYETV HHHHHHHCCEEEEECCCCCHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEHH TQAGGGLPLLAPMSEVAGRMSVQAAAHSLERAHGGRGILLGGVPGVAPAKIVILGAGVVG HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCCCC SNAAQIAVGTGAQVVVIDRSLDALRRMDRLLGARVITLFSNRDNIEEQVLSADAVIGGVL CCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHCCEE IPGAAAPKLVSRELLSRMKPGSVVVDVAIDQGGCFETSHATTHADPTYVVDGVVHYCVAN CCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHC MPGGVPRTSTYALNNATLPFVLALANKGWRQALKDDVHLRNGLNVADGKVTCLEVANDLR CCCCCCCCCEEEECCCCHHHHEEHHCHHHHHHHHHHHHHHCCCEECCCCEEEEHHHHHHH YVYHAPQTLLAA HHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1587598; 9634230; 12218036; 7822223 [H]