| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91788998
Identifier: 91788998
GI number: 91788998
Start: 3312618
End: 3312992
Strand: Direct
Name: 91788998
Synonym: Bpro_3138
Alternate gene names: NA
Gene position: 3312618-3312992 (Clockwise)
Preceding gene: 91788997
Following gene: 91789006
Centisome position: 63.7
GC content: 62.67
Gene sequence:
>375_bases ATGCATTCACTTTCGGCCATCCATCCCATGACCAAGCGCCCCGAAAACGTCCACGACCGCTACCACGCCCATGTTTATTT TGGCCCCGCCACCGTGGCGCAGGCCCGAGCGCTGTGCGAGCAGGCAGGTGAGCTGTTCGGGGTGGCCGTCGGCCGTGTGC ATGAACGTGAGATTGGGCCGCACCCGCACTGGAGCTGCCAGCTGGCATTTGACCGCGTCCAGTTTGAGCGCCTGATCCCG TGGCTGGCACAAAACCGCAACGGGCTTGATGTGTTCGTGCACGGGGTCACGGGCGATAACCTGGCCGATCACACGACCCA TGCCTCCTGGCTGGGCGAGGCCTCTGAATTGAAGCTGGACATGTTCAGGCGTTGA
Upstream 100 bases:
>100_bases GCGGCAAGATCCGGCGGTTTCCCTGCCCGAGATGATCTTTCTGGAGGGCCTGTAAACCCCGCAGTCGCGGCGGGCAAAGC GGATGACAGGACAATCGCCC
Downstream 100 bases:
>100_bases GCGGGAGGCCTGAAACGCTATTGATTTGATTGCGGACCTGGACGGGGCGAAGAGTCACAGTGTCTCACTGCAACACGTGG GGCTGGGATGGGGGCGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: Dopa 4 5-Dioxygenase Family Protein; Aromatic Ring-Cleaving Dioxygenase-Like Protein; Dioxygenase; Aromatic Ring-Cleaving Dioxygenase; DOPA 4 5-Dioxygenase; DOPA-Dioxygenase-Related Protein; Aromatic Ring-Cleaving Dioxygenase-Like; Dopa 4 5-Dioxygenase Family; DOPA-Dioxygenase-Like Protein; DOPA 4 5-Dioxygenase-Related Protein
Number of amino acids: Translated: 124; Mature: 124
Protein sequence:
>124_residues MHSLSAIHPMTKRPENVHDRYHAHVYFGPATVAQARALCEQAGELFGVAVGRVHEREIGPHPHWSCQLAFDRVQFERLIP WLAQNRNGLDVFVHGVTGDNLADHTTHASWLGEASELKLDMFRR
Sequences:
>Translated_124_residues MHSLSAIHPMTKRPENVHDRYHAHVYFGPATVAQARALCEQAGELFGVAVGRVHEREIGPHPHWSCQLAFDRVQFERLIP WLAQNRNGLDVFVHGVTGDNLADHTTHASWLGEASELKLDMFRR >Mature_124_residues MHSLSAIHPMTKRPENVHDRYHAHVYFGPATVAQARALCEQAGELFGVAVGRVHEREIGPHPHWSCQLAFDRVQFERLIP WLAQNRNGLDVFVHGVTGDNLADHTTHASWLGEASELKLDMFRR
Specific function: Unknown
COG id: COG3805
COG function: function code Q; Aromatic ring-cleaving dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14070; Mature: 14070
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSLSAIHPMTKRPENVHDRYHAHVYFGPATVAQARALCEQAGELFGVAVGRVHEREIGP CCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC HPHWSCQLAFDRVQFERLIPWLAQNRNGLDVFVHGVTGDNLADHTTHASWLGEASELKLD CCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHCCCHHHHHHH MFRR HHCC >Mature Secondary Structure MHSLSAIHPMTKRPENVHDRYHAHVYFGPATVAQARALCEQAGELFGVAVGRVHEREIGP CCCCCCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC HPHWSCQLAFDRVQFERLIPWLAQNRNGLDVFVHGVTGDNLADHTTHASWLGEASELKLD CCCCEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHCCCHHHHHHH MFRR HHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA